- Transcript HORVU3Hr1G110480.3
- Transcript IDHORVU3Hr1G110480.3
- Gene IDHORVU3Hr1G110480
Barley RTD
Exon Structure of HORVU3Hr1G110480.3
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 681733477 | 681733187 | - |
| chr3H | 2 | 681734115 | 681733967 | - |
| chr3H | 3 | 681734573 | 681734396 | - |
| chr3H | 4 | 681735055 | 681734894 | - |
| chr3H | 5 | 681735390 | 681735231 | - |
| chr3H | 6 | 681736144 | 681735866 | - |
| chr3H | 7 | 681736609 | 681736477 | - |
| chr3H | 8 | 681737010 | 681736938 | - |
| chr3H | 9 | 681737704 | 681737606 | - |
| chr3H | 10 | 681737948 | 681737800 | - |
| chr3H | 11 | 681738516 | 681738306 | - |
| chr3H | 12 | 681738721 | 681738587 | - |
| chr3H | 13 | 681738879 | 681738807 | - |
| chr3H | 14 | 681739133 | 681738961 | - |
| chr3H | 15 | 681739989 | 681739754 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g72880.1 | +3 | 0.0 | 1174 | 621/752 (83%) | protein|DNA mismatch repair protein Mlh1, putative, expressed |
| TAIR PP10 | AT4G09140 @ ARAPORT AT4G09140.1 @ TAIR |
+3 | 0.0 | 896 | 483/745 (65%) | Symbols: ATMLH1, MLH1 | MUTL-homologue 1 | chr4:5817107-5821035 REVERSE LENGTH=737 |
| BRACH PP3 | Bradi2g61370.1.p | +3 | 0.0 | 1269 | 664/751 (88%) | pacid=32771966 transcript=Bradi2g61370.1 locus=Bradi2g61370 ID=Bradi2g61370.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2501 bp)
>HORVU3Hr1G110480.3 2501 150831_barley_pseudomolecules CGGGCATGGAGGTCGACGACGCGGCGCCGCGCGGCGGGGAGCCGCCCCGCATCCGGCGGC TGGAGGAGTCGGTGGTGAACCGCATCGCCGCGGGGGAGGTGATCCAGCGGCCCTCGTCGG CGGTGAAGGAACTCGTCGAGAACAGCATCGACGCCGGCTCCTCCACCATCTCCGTCACCG TCAAGGACGGGGGCCTCAAGCTCATCCAGGTCTCGGACGACGGCCACGGCATCCGGTGTG AGGACTTGCCAATATTGTGTGAGAGGCATACTACCTCAAAGTTGTCTGCATATGAGGATC TACAGACAATAAAGTCCATGGGGTTCAGAGGGGAGGCTTTGGCCAGTATGACTTATGTTG GCCATGTTACCGTGACAACAATAACAGAAGGCCAACTGCATGGCTACAGAGTTTCTTATA GGGATGGAGTAATGGAGAATGACCCAAAGCCCTGTGCTGCGGTTAAAGGAACTCAAATCA TGGTTGAAAATTTATTCTACAATATGGTAGCTCGTAGGAAAACACTGCAGAACTCCAATG ATGACTATCCAAAGATAGTGGACTTCATCAGTCGGTTTGCAGTCCATCACATCAATGTGA ACTTCTCTTGCAGAAAGCATGGAGCCAATAGAGCAGATGTTCACAGTGGGAGCACATCTT CAAGGCTAGATGCTATCAGGAATGTCTATGGGGCTTCGGTTGTTCGTGATCTGATGGAAA TACAGGTTTCAGATGAGAATGCTGTAGATGAAATATTCAAGATGGATGGTTTCATCTCAA ATGCAAATTATGTGGCAAAGAAGACTACTATGATTCTTTTCATAAATGATCGACTTGTAG ATTGCACTTCTTTGAAAAGAGCTACTGAATTTGTGTACTCTGCAATACTGCCTCAAGCAT CGAAACCCTTCATATACATGTCCATCAATCTTCCACCAGAACACGTGGATGTCAATATAC ATCCAACCAAAAAGGAGGTTAGCCTCTTAAATCAAGAGCGTATTATTGAAAAAATTAAAG ATGCCATCGAGGAAAAACTGGTGAACTGTAATAACACAAGGATATTCCAAACTCAGGCAC TAAACCCTTCAGCACTTACTCAAGCTAACACACGAAAGGACATGGGTACCGAGGTCAGCA CGCCTACTGGAGAAAAATCTCAAAAGATTCCTGTGAGCCAAATTGTCAGAACAGATCCTC GCGATCCATCTGGAAGGTTGCACACCTATTGGCAAGGTCAAACTTCAAATCTTGAAAAGA AGTCTGACCTTGTTGCCGTAAGAAATATTGTAAGATCAAGAAGGAATCCAAAAGATGCTG GTGATTTGTCCAGTCGCCATGAGCTTGTTACAGAAATAGATTCTAACTTACATCCTGGTG AGCTCATCTTAACCTGTGATGTCCAAATCTGTCTCCACTTTTGTAGACTGATGATTTATG TTTTTCTGCTAGGCCTTTTCGATATTGTTAAGAATTGCACATATGTTGGAGTTGCGGATG AAGTTTTCGCTTTGATACAACACAATACCCTCTTATACCTTGTCAATGTGGTAAATGTTA GCAAAGAACTCATGTACCAACAAGCCTTGTGCCGTTTTGGGAACTTCAATGCTATAAAAC TCAGTGAACCAGCTCCACTTCTGGAGTTGCTGAGAATGGCACTGAAAGATGACGAGTCAA TGAGTGATGTAAATGAGAAGGAGAAACTAGAAATTGCAGAAGTGAACACTGAGATACTGA AAGAAAATGCTGAGATGATTAATGAGTACTTCTCTATTCACATTGATCAAGGTGGCAACC TGACCAGACTTCCTGTTGTACTTGATCAGTACACTCCTGATATGGATCGCCTTCCAGAGT TCATGTTGAGTCTAGGAAATGATATTACCTGGGACGTTGAGAAAGAGTGCTTCAGAACGG CAGCAGCTGCTATCGGAAACTTCTATGCGCTTCATCCTCCCATCCTTCCAAATCCATCTG GCAAAGGCATTCAGTTATACAAGAAAAATAAAGATTGCATGGGAAGTGCTGAACAGGCTG ATAACAATTTACCAAGTACAGATGAAGATGACATCGATCAAGAGCTGCTTGCGGAAGCAG AGGCAGCATGGGCTCAACGTGAGTGGACCATCCAGCACGTCTTGTTCCCGTCGATGCGAC TTTTCCTCAAGCCCCCTAAGTCGATGGCAACTGATGGAACGTTTGTCCAGATTGCTTCTC TAGACAAGCTTTACAAGATCTTCGAGAGATGCTAGCCGACAAGCGGCATGTCGAGAAGGA AGGGAAGAGCGCGACGCGACCGACGCCCTTGCCGGTTCCTTCCGGGACGTGTGTATATAA TGCGGTGTCACTGTTTTTTCCCCCCTTTTTCCGATAGGGCTGTAAATATTTTTGAAGGAC GAGCAAAGTTTGCTGGGCTCCAGCTCAGCCCTGGAATTGAATGGCAAATGCACGAATGAT TTGGCTCTGCTACGCAATGCTGTCATTGTTGTTTCCCTCTA