- Transcript HORVU3Hr1G110480.15
- Transcript IDHORVU3Hr1G110480.15
- Gene IDHORVU3Hr1G110480
Barley RTD
Exon Structure of HORVU3Hr1G110480.15
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 681739984 | 681739537 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g72880.1 | +1 | 1e-36 | 133 | 66/83 (80%) | protein|DNA mismatch repair protein Mlh1, putative, expressed |
| TAIR PP10 | AT4G09140 @ ARAPORT AT4G09140.1 @ TAIR |
+1 | 5e-33 | 122 | 63/75 (84%) | Symbols: ATMLH1, MLH1 | MUTL-homologue 1 | chr4:5817107-5821035 REVERSE LENGTH=737 |
| BRACH PP3 | Bradi2g61370.1.p | +1 | 5e-42 | 148 | 74/83 (89%) | pacid=32771966 transcript=Bradi2g61370.1 locus=Bradi2g61370 ID=Bradi2g61370.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (448 bp)
>HORVU3Hr1G110480.15 448 150831_barley_pseudomolecules ATGGAGGTCGACGACGCGGCGCCGCGCGGCGGGGAGCCGCCCCGCATCCGGCGGCTGGAG GAGTCGGTGGTGAACCGCATCGCCGCGGGGGAGGTGATCCAGCGGCCCTCGTCGGCGGTG AAGGAACTCGTCGAGAACAGCATCGACGCCGGCTCCTCCACCATCTCCGTCACCGTCAAG GACGGGGGCCTCAAGCTCATCCAGGTCTCGGACGACGGCCACGGCATCCGGGTACGCTCG CTTCCTAAATAAACCCTAAACCCCGGAACCAATCCCCCATCCCCCGAACCCTTGGTGCTG CCGCGGGCGCCTGCTACTGCAAAAATCCTTCAGATGCGAGCTGTTAATCGTGATTTCTGT TGATTGCGACCTTTTAATCCTTGCTGCGTACAGGACCGTGTGGGCGAATGATTGGGGATC TGATGTCTGTTTGTTCCGACTCACTCAG