- Transcript HORVU3Hr1G110480.13
- Transcript IDHORVU3Hr1G110480.13
- Gene IDHORVU3Hr1G110480
Barley RTD
Exon Structure of HORVU3Hr1G110480.13
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 681735055 | 681734705 | - |
| chr3H | 2 | 681735390 | 681735231 | - |
| chr3H | 3 | 681735974 | 681735866 | - |
| chr3H | 4 | 681736144 | 681736050 | - |
| chr3H | 5 | 681736609 | 681736477 | - |
| chr3H | 6 | 681737010 | 681736938 | - |
| chr3H | 7 | 681737704 | 681737606 | - |
| chr3H | 8 | 681737948 | 681737800 | - |
| chr3H | 9 | 681738721 | 681738306 | - |
| chr3H | 10 | 681739133 | 681738807 | - |
| chr3H | 11 | 681739978 | 681739754 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g72880.1 | +2 | 0.0 | 639 | 334/401 (83%) | protein|DNA mismatch repair protein Mlh1, putative, expressed |
| TAIR PP10 | AT4G09140 @ ARAPORT AT4G09140.1 @ TAIR |
+2 | 0.0 | 442 | 240/404 (59%) | Symbols: ATMLH1, MLH1 | MUTL-homologue 1 | chr4:5817107-5821035 REVERSE LENGTH=737 |
| BRACH PP3 | Bradi2g61370.4.p | +2 | 0.0 | 689 | 358/401 (89%) | pacid=32771968 transcript=Bradi2g61370.4 locus=Bradi2g61370 ID=Bradi2g61370.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2137 bp)
>HORVU3Hr1G110480.13 2137 150831_barley_pseudomolecules GTCGACGACGCGGCGCCGCGCGGCGGGGAGCCGCCCCGCATCCGGCGGCTGGAGGAGTCG GTGGTGAACCGCATCGCCGCGGGGGAGGTGATCCAGCGGCCCTCGTCGGCGGTGAAGGAA CTCGTCGAGAACAGCATCGACGCCGGCTCCTCCACCATCTCCGTCACCGTCAAGGACGGG GGCCTCAAGCTCATCCAGGTCTCGGACGACGGCCACGGCATCCGGTGTGAGGACTTGCCA ATATTGTGTGAGAGGCATACTACCTCAAAGTTGTCTGCATATGAGGATCTACAGACAATA AAGTCCATGGGGTTCAGAGGGGAGGCTTTGGCCAGTATGACTTATGTTGGCCATGTTACC GTGACAACAATAACAGAAGGCCAACTGCATGGCTACAGGTCAGTCCATGAGCAACTTCAA ATATTTCTGCTAGACTCTAGAGTCGTCTGTTAATGATTATTATCATGTTGTCCTGTCAGA GTTTCTTATAGGGATGGAGTAATGGAGAATGACCCAAAGCCCTGTGCTGCGGTTAAAGGA ACTCAAATCATGGTTGAAAATTTATTCTACAATATGGTAGCTCGTAGGAAAACACTGCAG AACTCCAATGATGACTATCCAAAGATAGTGGACTTCATCAGTCGGTTTGCAGTCCATCAC ATCAATGTGAACTTCTCTTGCAGAAAGGTAAATGTAGCTGTTTTCTGTGAACTCGTGAGT TTTGAGAAGGTGACATTTGCCTCCTCCTCTGTCACAGCATGGAGCCAATAGAGCAGATGT TCACAGTGGGAGCACATCTTCAAGGCTAGATGCTATCAGGAATGTCTATGGGGCTTCGGT TGTTCGTGATCTGATGGAAATACAGGTTTCAGATGAGAATGCTGTAGATGAAATATTCAA GATGGATGGTTTCATCTCAAATGCAAATTATGTGGCAAAGAAGACTACTATGATTCTTTT CATAAATGATCGACTTGTAGATTGCACTTCTTTGAAAAGAGCTACTGAATTTGTGTACTC TGCAATACTGCCTCAAGCATCGAAACCCTTCATATACATGTCCATCAATCTTCCACCAGA ACACGTGGATGTCAATATACATCCAACCAAAAAGGAGGTTAGCCTCTTAAATCAAGAGCG TATTATTGAAAAAATTAAAGATGCCATCGAGGAAAAACTGGTGAACTGTAATAACACAAG GATATTCCAAACTCAGGCACTAAACCCTTCAGCACTTACTCAAGCTAACACACGAAAGGA CATGGGTACCGAGGTCAGCACGCCTACTGGAGAAAAATCTCAAAAGATTCCTGTGAGCCA AATTGTCAGAACAGATCCTCGCGATCCATCTGGAAGGTTGCACACCTATTGGCAAGGTCA AACTTCAAATCTTGAAAAGAAGTCTGACCTTGTTGCCGTAAGAAATATTGTAAGATCAAG AAGGAATCCAAAAGATGCTGGTGATTTGTCCAGTCGCCATGAGCTTGTTACAGAAATAGA TTCTAACTTACATCCTGGCCTTTTCGATATTGTTAAGAATTGCACATATGTTGGAGTTGC GGATGAAGTTTTCGCTTTGATACAACACAATACCCTCTTATACCTTGTCAATGTGGTAAA TGTTAGCAAAGAACTCATGTACCAACAAGCCTTGTGCCGTTTTGGGAACTTCAATGCTAT AAAACTCAGTGAACCAGCTCCACTTCTGGAGTTGCTGAGAATGGCACTGAAAGATGACGA GTCAATGAGTGATGTAAATGAGAAGGAGAAACTAGAAATTGCAGAAGTGAACACTGAGAT ACTGAAAGAAAATGCTGAGATGATTAATGAGTACTTCTCTATTCACATTGATCAAGGTGG CAACCTGACCAGACTTCCTGTTGTACTTGATCAGTACACTCCTGATATGGATCGCCTTCC AGAGTTCATGTTGAGTCTAGGAAATGATGTAGGTTTCTATTATGCTGCCGCGTTCATTAC ATATGGTATTTTAAATTTGATCATGATATTTGTTTATCCATTCCCTGCTGAGATGATGGC AAGTAGGTTTTCAGGCTGATACCGTGTTCAAATTTTAATTTTGGTGTTTCATGTAGATAT GGCAGCCAGCTGTCCAGAAGTAACTTATGTTTCTTAT