- Transcript HORVU3Hr1G092790.2
- Transcript IDHORVU3Hr1G092790.2
- Gene IDHORVU3Hr1G092790
Barley RTD
Exon Structure of HORVU3Hr1G092790.2
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 640209907 | 640209790 | + |
| chr3H | 2 | 640210375 | 640210254 | + |
| chr3H | 3 | 640211444 | 640210811 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g21390.1 | +3 | 2e-33 | 119 | 59/66 (89%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g20650.1.p | +3 | 9e-31 | 110 | 55/58 (95%) | pacid=32797822 transcript=Bradi1g20650.1 locus=Bradi1g20650 ID=Bradi1g20650.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (874 bp)
>HORVU3Hr1G092790.2 874 150831_barley_pseudomolecules GCAAAGTCTCGCATTTCCCCTGCTGCCCCCGACGCTCTCTTCCTCCTCTGGTGCGACACA GGTGGATCTCGCCGTCCCTGCTACGTCTTCGCCGCCGCATCTCGTCGCCGGTGCCAAGTT GAATCCTACCAGATCTTTATTCGTCGTTACCAATCTCAGTTACCCTGAAGCGATACTACT CCTAGCAGTTTATTTTCGACAAGAATTGGGCCCTTTGCATCGCGCTAGGCCTGCCCCTTG AGATGGGCTTGTGGATGCTGCTGGAGGGTTTTTTGCTTCTTGCAAATTCTTTGGCCATCC TGAATGAAGACCGCTTTCTTGGTCCCAGGGGCTGGAGCATGCCTGAAGTTTCAGGAAATG GGCAAACAAAGTCCTTGAAGGGGCAGATCGTGGGGCTCATCTACGCCACTCAGTTTTTGC GGATGCCCTTGATAGCGCTTAATATTCTTATCATTGTTGTGAAATTGGTGTCAGGCTGAG GATCTTTGTCGCGTCACTGCTGTTGGGTTGAACTGATTTCAGTTCCAGCATTATGTACAA GCTAATCATGTTCAGAAGTTGCTGGAAGGATGTTCATGCTGACATGAATGTGGCCTGTTG GTTTTGTTGCTGTAAATCCCTCTGACTCTGAGGGTATCTTTCCTCCTGTATGACTTCTGA TTCAGTATGCACTATTGCACTTACGATGTCTTGATCACCATGTAAATATTCAATCTAATT TAAACGTTGGCACTGCTAACGGTTAAAGACATTATCTGGTGACAGAACCAATGTTTTCTG CAGTTTTGCCTTATTTGCTGTCTAGTTGATTGTATATCCTTTTCCTTGGGAGTCATTTTG AGCCCAGTCTTTTGTTTTAGGTTGTTTTTTGTGG