Transcript Data
Barley RTD
Links



Exon Structure of HORVU3Hr1G092790.1

ChromosomeExonStartStopDirection
chr3H1640209907640209790+
chr3H2640211444640210811+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os03g21390.1 +1 1e-33 118 59/66 (89%) protein|expressed protein
TAIR PP10None-----
BRACH PP3 Bradi1g20650.1.p +1 2e-31 111 55/58 (95%) pacid=32797822 transcript=Bradi1g20650.1 locus=Bradi1g20650 ID=Bradi1g20650.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (752 bp)

>HORVU3Hr1G092790.1 752 150831_barley_pseudomolecules
GCAAAGTCTCGCATTTCCCCTGCTGCCCCCGACGCTCTCTTCCTCCTCTGGTGCGACACA
GGTGGATCTCGCCGTCCCTGCTACGTCTTCGCCGCCGCATCTCGTCGCCGGTGCCAAGAG
ATGGGCTTGTGGATGCTGCTGGAGGGTTTTTTGCTTCTTGCAAATTCTTTGGCCATCCTG
AATGAAGACCGCTTTCTTGGTCCCAGGGGCTGGAGCATGCCTGAAGTTTCAGGAAATGGG
CAAACAAAGTCCTTGAAGGGGCAGATCGTGGGGCTCATCTACGCCACTCAGTTTTTGCGG
ATGCCCTTGATAGCGCTTAATATTCTTATCATTGTTGTGAAATTGGTGTCAGGCTGAGGA
TCTTTGTCGCGTCACTGCTGTTGGGTTGAACTGATTTCAGTTCCAGCATTATGTACAAGC
TAATCATGTTCAGAAGTTGCTGGAAGGATGTTCATGCTGACATGAATGTGGCCTGTTGGT
TTTGTTGCTGTAAATCCCTCTGACTCTGAGGGTATCTTTCCTCCTGTATGACTTCTGATT
CAGTATGCACTATTGCACTTACGATGTCTTGATCACCATGTAAATATTCAATCTAATTTA
AACGTTGGCACTGCTAACGGTTAAAGACATTATCTGGTGACAGAACCAATGTTTTCTGCA
GTTTTGCCTTATTTGCTGTCTAGTTGATTGTATATCCTTTTCCTTGGGAGTCATTTTGAG
CCCAGTCTTTTGTTTTAGGTTGTTTTTTGTGG