Transcript Data
Barley RTD
Links



Exon Structure of HORVU3Hr1G061510.1

ChromosomeExonStartStopDirection
chr3H1468069075468068696-
chr3H2468069298468069228-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os03g21390.1 +2 3e-35 119 59/66 (89%) protein|expressed protein
TAIR PP10None-----
BRACH PP3 Bradi1g20650.1.p +2 2e-32 110 55/58 (95%) pacid=32797822 transcript=Bradi1g20650.1 locus=Bradi1g20650 ID=Bradi1g20650.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (451 bp)

>HORVU3Hr1G061510.1 451 150831_barley_pseudomolecules
CATATGGACATTCCTGCAACGAAGGGTGCTTTCCCAGCGAACCTTGAAATTTACTTTAGA
AACTTTATGGTTTATGATGGTCTGGTGGCTGGTGGCACATAAGTACCAAAATTTTCAACT
AACATAGTTGTGGTATTCATATACAGAGATGGGCTTGTGGATGCTGCTGGAGGGTTTTTT
GCTTCTTGCAAATTCTTTGGCCATCCTGAATGAAGACCGCTTTCTTGGTCCCAGGGGCTG
GAGCATGCCTGAAGTTTCAGGAAATGGGCAAACAAAGTCCTTGAAGGGGCAGATCGTGGG
GCTCATCTACGCCACTCAGTTTTTGCGGATGCCCTTGATAGCGCTTAATATTCTTATCAT
TGTTGTGAAATTGGTGTCAGGCTGAGGATCTTTGTCGCGTCACTGCTGTTGGGTTGAACT
GATTTCAGTTCCAGCATTATGTACAAGCTAA