Transcript Data
Barley RTD
Links



Exon Structure of HORVU3Hr1G055650.7

ChromosomeExonStartStopDirection
chr3H1413469893413469762-
chr3H2413470520413470034-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os01g43372.1 +1 4e-93 286 143/163 (88%) protein|expressed protein
TAIR PP10 AT5G64550 @ ARAPORT
AT5G64550.1 @ TAIR		 +1 8e-81 253 125/154 (81%) Symbols: | loricrin-related | chr5:25801794-25803698 REVERSE LENGTH=634
BRACH PP3 Bradi2g43880.2.p +1 4e-104 313 155/165 (94%) pacid=32778732 transcript=Bradi2g43880.2 locus=Bradi2g43880 ID=Bradi2g43880.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (619 bp)

>HORVU3Hr1G055650.7 619 150831_barley_pseudomolecules
GAGAAGTGCACCAAGAGCGCAGAAGGTCATTCTGGCCTCTGCATCTCTCATGGGGGTGGG
AGGCGCTGCCAGTTTCCAGAATGTGCAAAGGGTGCACAGGGAAGCACAAAGTTCTGCAAG
GCACATGGTGGAGGCAAGCGCTGCACTTTCTTGGGCTGTACCAAAGGAGCTGAAGGCAGC
ACCCCTTACTGCAAGGGCCATGGAGGAGGCAAGCGCTGCTTATTTGAGGGTGGTGGAGTG
TGCCCCAAGAGCGTGCATGGCGGGACGCAGTACTGTGTTGCGCACGGTGGTGGCAAGAGG
TGCGCTATTTCTGATTGCACCAAGAGTGCTAGAGGGCGGACGGAGTACTGCGTGCGCCAT
GGTGGTGGCAAGAGATGCAGGTTCGACGGCTGTGTGAAGAGTGCACAGGGGAGCACTGAT
TTCTGCAAGGCGCATGGGGGAGGCAAACGCTGCTCATGGGGCCTGCCGGGCTCAAGCTTC
GGTATTGGGCGAGATGGAAGTTGCTGCAGCAGTGAAGGTTGATCCTGTTTCGATGCAGTC
GGGGTCTCCATTGCCGGAGCCGGAGGGCAGGGTGCATGGTGGTGGGCTGCTGGCGCTGCT
TTCTCGCGGCGGCAACCAC