- Transcript HORVU3Hr1G055650.5
- Transcript IDHORVU3Hr1G055650.5
- Gene IDHORVU3Hr1G055650
Barley RTD
Exon Structure of HORVU3Hr1G055650.5
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 413470169 | 413469705 | - |
| chr3H | 2 | 413471603 | 413470269 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g43372.1 | +1 | 0.0 | 741 | 457/646 (71%) | protein|expressed protein |
| TAIR PP10 | AT1G64140 @ ARAPORT AT1G64140.1 @ TAIR |
+1 | 5e-147 | 439 | 276/545 (51%) | Symbols: | BEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G64550.1); Has 3596 Blast hits to 2004 proteins in 150 species: Archae - 0; Bacteria - 54; Metazoa - 1597; Fungi - 38; Plants - 513; Viruses - 9; Other Eukaryotes - 1385 (source: NCBI BLink). | chr1:23804069-23806009 REVERSE LENGTH=646 |
| BRACH PP3 | Bradi2g43880.2.p | +1 | 0.0 | 900 | 511/635 (80%) | pacid=32778732 transcript=Bradi2g43880.2 locus=Bradi2g43880 ID=Bradi2g43880.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1800 bp)
>HORVU3Hr1G055650.5 1800 150831_barley_pseudomolecules ATGGACAAAACTTCTCATGGCCTTGGATTTGGTGATAGCATCAACTCGTTAAACACTTCT CATTACCGGAGTTCAGTCCAACACACTGCTCAGCATAGAGACACTACACTTGATTCCACA TCATATTCCAGCTTCTCATCCACCAACACAAAAGCCCTGAAAAGGAAGTGGGGTACTATG GCTGGAGCAGAAGGTACTGGGGATGCATTACTCACTCTGGGTTTAGGCCGTTCACCAAGT TCATCTGACAATAGCAAAGTAAGCTCTGCCACAGCCTGTGCAATGTCTCCATGCTCGCTA AAGGAGGCTGATGAGGAGTCATCTGTTGATCTTAGCTTGAATTTTGAGCTTTCCCTTGGC AATGATGTTGCACGTTTTCAAAGGAAATCCTCTGCTGGTTTAGTAGCCAATTCTCCTAAA CTGGATCTTCAGTTGAGTTTATCCACTGGCTCACCTGAATCTGCTGTCACTTGTACAAAT ATGGTGTCACCAAATATTCATGATGGCTTGGACATACCAGTGACCTATTCATTACCAGCC ATTATAGGGAATGGGTCAGCACCGTCTAGTTGGGGTTTTGAGCACTCTGTGGTTTCATCA TCATATGCGTCTGAAGCAACATATGCATTTCCATTTTCGAAGATACCCAGACAAGAGAAT GGTACTTTGTCTTCACCAGTCATATCGTCAACTATGCCAGCAAGTGTGAAGAGCTCAGTT GCCTGTACTTCGGTGGTAACTAACCCTCAGCAGCGCAATCTTAACACTAAAACCTGCCAG TTCCCTGGATGTGGCAAAGGGGCAAGAGGTGCATCAGGGCATTGTATAGCCCATGGTGGT GGTAGGCGATGCCAGAAAGCTGGTTGCCAGAAGGGTGCTGAAGGAAGGACCATATATTGC AAGGCCCATGGTGGAGGGAGGAGATGTGAGTTTCTTGGATGTACAAAGAGCGCTGAAGGA CGCACCGACCACTGCATTGCCCATGGTGGTGGCCGCCGGTGCAGTAATGATGGCTGCTCC CGTGCTGCCCGAGGAAGATCTGGCTTATGCATCAGGCATGGTGGTGGAAAAAGGTGTCAG CAGGAGAAGTGCACCAAGAGCGCAGAAGGTCATTCTGGCCTCTGCATCTCTCATGGGGGT GGGAGGCGCTGCCAGTTTCCAGAATGTGCAAAGGGTGCACAGGGAAGCACAAAGTTCTGC AAGGCACATGGTGGAGGCAAGCGCTGCACTTTCTTGGGCTGTACCAAAGGAGCTGAAGGC AGCACCCCTTACTGCAAGGGCCATGGAGGAGGCAAGCGCTGCTTATTTGAGGGTGGTGGA GTGTGCCCCAAGAGCGTGCGCCATGGTGGTGGCAAGAGATGCAGGTTCGACGGCTGTGTG AAGAGTGCACAGGGGAGCACTGATTTCTGCAAGGCGCATGGGGGAGGCAAACGCTGCTCA TGGGGCCTGCCGGGCTCAAGCTTCGGTATTGGCACTGAGCAGTGTGATAAGTTTGCTCGC AGCAAGACTGGCCTCTGTTCAGCTCACACCGCTCTAGTCCAGGACCACTGTGTTCATGGT GGTGGTACATTAGGCCCTGTAATCCACCACTTCGCCGCAGATGTTAAACCCGGCGAGATG GAAGTTGCTGCAGCAGTGAAGGTTGATCCTGTTTCGATGCAGTCGGGGTCTCCATTGCCG GAGCCGGAGGGCAGGGTGCATGGTGGTGGGCTGCTGGCGCTGCTTTCTCGCGGCGGCAAC CACACAGGCCCTGTTGGTAACTCCGATAACGGCGCTTCTGTCATGATGGCGTGGATGTGA