- Transcript HORVU3Hr1G055650.3
- Transcript IDHORVU3Hr1G055650.3
- Gene IDHORVU3Hr1G055650
Barley RTD
Exon Structure of HORVU3Hr1G055650.3
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 413471863 | 413469493 | - |
| chr3H | 2 | 413472774 | 413472688 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g43372.1 | +3 | 0.0 | 823 | 489/648 (75%) | protein|expressed protein |
| TAIR PP10 | AT1G64140 @ ARAPORT AT1G64140.1 @ TAIR |
+3 | 1e-172 | 513 | 302/545 (55%) | Symbols: | BEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G64550.1); Has 3596 Blast hits to 2004 proteins in 150 species: Archae - 0; Bacteria - 54; Metazoa - 1597; Fungi - 38; Plants - 513; Viruses - 9; Other Eukaryotes - 1385 (source: NCBI BLink). | chr1:23804069-23806009 REVERSE LENGTH=646 |
| BRACH PP3 | Bradi2g43880.2.p | +3 | 0.0 | 982 | 543/635 (86%) | pacid=32778732 transcript=Bradi2g43880.2 locus=Bradi2g43880 ID=Bradi2g43880.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2458 bp)
>HORVU3Hr1G055650.3 2458 150831_barley_pseudomolecules ACAAGACTGTTATTTTTGCAGGGACCGCTGATTTCACTCCTGTGTGTTTTCAACTCACTT GGGATCCGCGAGAGTGCTGCTATACTGGATCATCGCTTTCTGTTTGGCCTGAGCTGTGGA AGTTTCTAAGTAGAAACTGAGGGTCAGTTCAAAACTTTATCCCACTCACCCCATACATAC TGGCGAGAAATGGATCGTGATGATGTATCTGGCTTTGTTAGCGGGGGTTGCAAGCTGTTC TGAGTTTTCTAACCTAGTAGAAGTTAATAAATAAAGTTATGATACCAGGAAGTCAGTCAA CTGGCGGTTCTTTTCATTTACTAATTGGTTGATGTTTCCGAATTGGAATGGACAAAACTT CTCATGGCCTTGGATTTGGTGATAGCATCAACTCGTTAAACACTTCTCATTACCGGAGTT CAGTCCAACACACTGCTCAGCATAGAGACACTACACTTGATTCCACATCATATTCCAGCT TCTCATCCACCAACACAAAAGCCCTGAAAAGGAAGTGGGGTACTATGGCTGGAGCAGAAG GTACTGGGGATGCATTACTCACTCTGGGTTTAGGCCGTTCACCAAGTTCATCTGACAATA GCAAAGTAAGCTCTGCCACAGCCTGTGCAATGTCTCCATGCTCGCTAAAGGAGGCTGATG AGGAGTCATCTGTTGATCTTAGCTTGAATTTTGAGCTTTCCCTTGGCAATGATGTTGCAC GTTTTCAAAGGAAATCCTCTGCTGGTTTAGTAGCCAATTCTCCTAAACTGGATCTTCAGT TGAGTTTATCCACTGGCTCACCTGAATCTGCTGTCACTTGTACAAATATGGTGTCACCAA ATATTCATGATGGCTTGGACATACCAGTGACCTATTCATTACCAGCCATTATAGGGAATG GGTCAGCACCGTCTAGTTGGGGTTTTGAGCACTCTGTGGTTTCATCATCATATGCGTCTG AAGCAACATATGCATTTCCATTTTCGAAGATACCCAGACAAGAGAATGGTACTTTGTCTT CACCAGTCATATCGTCAACTATGCCAGCAAGTGTGAAGAGCTCAGTTGCCTGTACTTCGG TGGTAACTAACCCTCAGCAGCGCAATCTTAACACTAAAACCTGCCAGTTCCCTGGATGTG GCAAAGGGGCAAGAGGTGCATCAGGGCATTGTATAGCCCATGGTGGTGGTAGGCGATGCC AGAAAGCTGGTTGCCAGAAGGGTGCTGAAGGAAGGACCATATATTGCAAGGCCCATGGTG GAGGGAGGAGATGTGAGTTTCTTGGATGTACAAAGAGCGCTGAAGGACGCACCGACCACT GCATTGCCCATGGTGGTGGCCGCCGGTGCAGTAATGATGGCTGCTCCCGTGCTGCCCGAG GAAGATCTGGCTTATGCATCAGGCATGGTGGTGGAAAAAGGTGTCAGCAGGAGAAGTGCA CCAAGAGCGCAGAAGGTCATTCTGGCCTCTGCATCTCTCATGGGGGTGGGAGGCGCTGCC AGTTTCCAGAATGTGCAAAGGGTGCACAGGGAAGCACAAAGTTCTGCAAGGCACATGGTG GAGGCAAGCGCTGCACTTTCTTGGGCTGTACCAAAGGAGCTGAAGGCAGCACCCCTTACT GCAAGGGCCATGGAGGAGGCAAGCGCTGCTTATTTGAGGGTGGTGGAGTGTGCCCCAAGA GCGTGCATGGCGGGACGCAGTACTGTGTTGCGCACGGTGGTGGCAAGAGGTGCGCTATTT CTGATTGCACCAAGAGTGCTAGAGGGCGGACGGAGTACTGCGTGCGCCATGGTGGTGGCA AGAGATGCAGGTTCGACGGCTGTGTGAAGAGTGCACAGGGGAGCACTGATTTCTGCAAGG CGCATGGGGGAGGCAAACGCTGCTCATGGGGCCTGCCGGGCTCAAGCTTCGGTATTGGCA CTGAGCAGTGTGATAAGTTTGCTCGCAGCAAGACTGGCCTCTGTTCAGCTCACACCGCTC TAGTCCAGGACCACTGTGTTCATGGTGGTGGTACATTAGGCCCTGTAATCCACCACTTCG CCGCAGATGTTAAACCCGGCGAGATGGAAGTTGCTGCAGCAGTGAAGGTTGATCCTGTTT CGATGCAGTCGGGGTCTCCATTGCCGGAGCCGGAGGGCAGGGTGCATGGTGGTGGGCTGC TGGCGCTGCTTTCTCGCGGCGGCAACCACACAGGCCCTGTTGGTAACTCCGATAACGGCG CTTCTGTCATGATGGCGTGGATGTGAGCGGGCGGGCATTCTCATCAAGAATTGGTTGCTT CAAGTTTTGATCTGTTTCCAGAGCTAATGCTGTGGCGGGATAAAGTTCCACATTTCACCA ATTGTTGTCCTAGTCGTTTGGAACTGGTAGGACATATATCCTCCGTGTAGAATAAATAAG GGAGAGCGTTGTGGGCTTCTCTGTTATTGTAATGTAATTAATTAATTAATGTCGTCAA