- Transcript HORVU3Hr1G055650.1
- Transcript IDHORVU3Hr1G055650.1
- Gene IDHORVU3Hr1G055650
Barley RTD
Exon Structure of HORVU3Hr1G055650.1
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 413471863 | 413469358 | - |
| chr3H | 2 | 413472753 | 413472688 | - |
| chr3H | 3 | 413474723 | 413474390 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g43372.1 | +1 | 0.0 | 823 | 489/648 (75%) | protein|expressed protein |
| TAIR PP10 | AT1G64140 @ ARAPORT AT1G64140.1 @ TAIR |
+1 | 8e-171 | 513 | 302/545 (55%) | Symbols: | BEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G64550.1); Has 3596 Blast hits to 2004 proteins in 150 species: Archae - 0; Bacteria - 54; Metazoa - 1597; Fungi - 38; Plants - 513; Viruses - 9; Other Eukaryotes - 1385 (source: NCBI BLink). | chr1:23804069-23806009 REVERSE LENGTH=646 |
| BRACH PP3 | Bradi2g43880.2.p | +1 | 0.0 | 982 | 543/635 (86%) | pacid=32778732 transcript=Bradi2g43880.2 locus=Bradi2g43880 ID=Bradi2g43880.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2906 bp)
>HORVU3Hr1G055650.1 2906 150831_barley_pseudomolecules GCCTTTTGCCCGCTTTCCAATTTCCCCTCGCCCACAACGGGGTGGCCACAGCGATTTACC TGTGGCGCCCCGACCCGCCCCACTCCTTCCTCTCTCTCTCTCTCTTTTATAGCGCTCCCC CTGCGCGCCTGCGTCCTCGGTTTTTCTCCGCTGAGCTTTCCTTCAACCCCGCTCAGCTCC CTCCCTTCCTACAAATCTGGTCTGGTGGGCGCTGTTCGCCGCGGCGGGTCTCTCGCGCCC GCGCTCCCGCAACAACCTCAAAACCCTAGCCATCCTCGCGACCCAGTCGATTGGATCGAC CGCTTCCTCCTCCTCCGCCCAGACCCAGACCCAGGGACCGCTGATTTCACTCCTGTGTGT TTTCAACTCACTTGGGATCCGCGAGAGTGCTGCTATACTGGATCATCGCTTTCTGTTTGG CCTGAGCTGTGGAAGTTTCTAAGTAGAAACTGAGGGTCAGTTCAAAACTTTATCCCACTC ACCCCATACATACTGGCGAGAAATGGATCGTGATGATGTATCTGGCTTTGTTAGCGGGGG TTGCAAGCTGTTCTGAGTTTTCTAACCTAGTAGAAGTTAATAAATAAAGTTATGATACCA GGAAGTCAGTCAACTGGCGGTTCTTTTCATTTACTAATTGGTTGATGTTTCCGAATTGGA ATGGACAAAACTTCTCATGGCCTTGGATTTGGTGATAGCATCAACTCGTTAAACACTTCT CATTACCGGAGTTCAGTCCAACACACTGCTCAGCATAGAGACACTACACTTGATTCCACA TCATATTCCAGCTTCTCATCCACCAACACAAAAGCCCTGAAAAGGAAGTGGGGTACTATG GCTGGAGCAGAAGGTACTGGGGATGCATTACTCACTCTGGGTTTAGGCCGTTCACCAAGT TCATCTGACAATAGCAAAGTAAGCTCTGCCACAGCCTGTGCAATGTCTCCATGCTCGCTA AAGGAGGCTGATGAGGAGTCATCTGTTGATCTTAGCTTGAATTTTGAGCTTTCCCTTGGC AATGATGTTGCACGTTTTCAAAGGAAATCCTCTGCTGGTTTAGTAGCCAATTCTCCTAAA CTGGATCTTCAGTTGAGTTTATCCACTGGCTCACCTGAATCTGCTGTCACTTGTACAAAT ATGGTGTCACCAAATATTCATGATGGCTTGGACATACCAGTGACCTATTCATTACCAGCC ATTATAGGGAATGGGTCAGCACCGTCTAGTTGGGGTTTTGAGCACTCTGTGGTTTCATCA TCATATGCGTCTGAAGCAACATATGCATTTCCATTTTCGAAGATACCCAGACAAGAGAAT GGTACTTTGTCTTCACCAGTCATATCGTCAACTATGCCAGCAAGTGTGAAGAGCTCAGTT GCCTGTACTTCGGTGGTAACTAACCCTCAGCAGCGCAATCTTAACACTAAAACCTGCCAG TTCCCTGGATGTGGCAAAGGGGCAAGAGGTGCATCAGGGCATTGTATAGCCCATGGTGGT GGTAGGCGATGCCAGAAAGCTGGTTGCCAGAAGGGTGCTGAAGGAAGGACCATATATTGC AAGGCCCATGGTGGAGGGAGGAGATGTGAGTTTCTTGGATGTACAAAGAGCGCTGAAGGA CGCACCGACCACTGCATTGCCCATGGTGGTGGCCGCCGGTGCAGTAATGATGGCTGCTCC CGTGCTGCCCGAGGAAGATCTGGCTTATGCATCAGGCATGGTGGTGGAAAAAGGTGTCAG CAGGAGAAGTGCACCAAGAGCGCAGAAGGTCATTCTGGCCTCTGCATCTCTCATGGGGGT GGGAGGCGCTGCCAGTTTCCAGAATGTGCAAAGGGTGCACAGGGAAGCACAAAGTTCTGC AAGGCACATGGTGGAGGCAAGCGCTGCACTTTCTTGGGCTGTACCAAAGGAGCTGAAGGC AGCACCCCTTACTGCAAGGGCCATGGAGGAGGCAAGCGCTGCTTATTTGAGGGTGGTGGA GTGTGCCCCAAGAGCGTGCATGGCGGGACGCAGTACTGTGTTGCGCACGGTGGTGGCAAG AGGTGCGCTATTTCTGATTGCACCAAGAGTGCTAGAGGGCGGACGGAGTACTGCGTGCGC CATGGTGGTGGCAAGAGATGCAGGTTCGACGGCTGTGTGAAGAGTGCACAGGGGAGCACT GATTTCTGCAAGGCGCATGGGGGAGGCAAACGCTGCTCATGGGGCCTGCCGGGCTCAAGC TTCGGTATTGGCACTGAGCAGTGTGATAAGTTTGCTCGCAGCAAGACTGGCCTCTGTTCA GCTCACACCGCTCTAGTCCAGGACCACTGTGTTCATGGTGGTGGTACATTAGGCCCTGTA ATCCACCACTTCGCCGCAGATGTTAAACCCGGCGAGATGGAAGTTGCTGCAGCAGTGAAG GTTGATCCTGTTTCGATGCAGTCGGGGTCTCCATTGCCGGAGCCGGAGGGCAGGGTGCAT GGTGGTGGGCTGCTGGCGCTGCTTTCTCGCGGCGGCAACCACACAGGCCCTGTTGGTAAC TCCGATAACGGCGCTTCTGTCATGATGGCGTGGATGTGAGCGGGCGGGCATTCTCATCAA GAATTGGTTGCTTCAAGTTTTGATCTGTTTCCAGAGCTAATGCTGTGGCGGGATAAAGTT CCACATTTCACCAATTGTTGTCCTAGTCGTTTGGAACTGGTAGGACATATATCCTCCGTG TAGAATAAATAAGGGAGAGCGTTGTGGGCTTCTCTGTTATTGTAATGTAATTAATTAATT AATGTCGTCAAACTGCCCTTGCTTTGTGTTTATTACAATTTGTGTAATCTGATACTACTT CACAGTTCCTACTTGGATACAATGTCTTCGCAGTTTGCTTTGCTTTGTGTTTCTGGTAAC ACTGTAGTATGTGCTTTGTGTTTCTG