- Transcript HORVU3Hr1G018200.9
- Transcript IDHORVU3Hr1G018200.9
- Gene IDHORVU3Hr1G018200
Barley RTD
Exon Structure of HORVU3Hr1G018200.9
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 47557249 | 47557143 | + |
| chr3H | 2 | 47557628 | 47557557 | + |
| chr3H | 3 | 47558732 | 47558463 | + |
| chr3H | 4 | 47559206 | 47559088 | + |
| chr3H | 5 | 47559495 | 47559319 | + |
| chr3H | 6 | 47560084 | 47559802 | + |
| chr3H | 7 | 47560410 | 47560173 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os10g41730.1 | +3 | 1e-70 | 222 | 104/135 (77%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi3g33790.1.p | +3 | 3e-82 | 251 | 122/142 (86%) | pacid=32818822 transcript=Bradi3g33790.1 locus=Bradi3g33790 ID=Bradi3g33790.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1266 bp)
>HORVU3Hr1G018200.9 1266 150831_barley_pseudomolecules CCCGGTTTTACCCCCGGCCAGCCTCCCTGCTCTTCCTCGAGGCGACACACCGGTGGACGG CGACGGTGGTAATCGACGGCGGAGGCTCCCTCCCGGCAACAACGACAACCATTGGAAGCT AGGGTTCATCACTGCACATTGGGGAATTTCGTGTGAAGGACCACTTCTTCATTCAACATG TTGACCTGAGCCCAGCCTATCATACGTGCCTCGTTCTCAGCAGCTGCAGACGTTCCCTAA GAAAATAGGCAAGCACTGCCGAGAAATCGATCGAGGACCGGGGTTGCTAAGGGAAACGAG ATGAGCGGTTGATCGGGATGGAGGTTGTGGTGCGGAAGATGCAGCAGCGGGTGAGGAAGG CACGGGAGGAGACGGAGCGATGGGATGACCTCAACTCCCGCCTCCTGTCCCAGTTCTCCA ATGCTGCCGCCATCATCACCCGCCTTCTGGTACTTGGAGATGCTAAAAATCATGGTATCC TGCGGTGTGTGCCCAACATCAGGGAGGATCTCTTGGGGGCACAGATGAGGAGCCTGGAGC TCATATTTGTTTCAATGAGGGAGACTCTGGAGGAGTTCAGTGGCATTGCCAAAGGTTTGA GCAAGGTACTGCGCGATGCTAATCAGATGGTGAGGGGTGGATTGGCACTCACTGGGAAAC AATTGCAGTTACAAGTGGGAATTTTGCCAACTATTGCAGACTGCTTGGGTGGGCTACAAA CACTGTCTGAAATGCACCAGGCTGAGTATGCGCTAAAATCATCAATCATCTCTTTGTTGA CATGGAAAAGCAGGCAAGTTGGAATTTATGGCCACTAAACTGTCCTTAGATTTGTTCCCG ATAATTCTGTATCTCTGTTAGTTTACCCAATACTAATCCCCCTCCCGTCCCTTAAAACCA GCAGTTGGCCAAATCTCGATCCTTATGTTTCTCCATTTACTTTTGGTGCCCTTTCTTTTG CAGTTCAAGTGAAATCGCTGCAATGCGTCAACTCTTGGTAGACCAACCAAACATACCGAA AGATGAAGTGCAATCTGTCTTCGACATTATATTTGCAGATGAAATTTGCTAAGTTGAGCA TGCATCCTACTATTGGAAGCCCTATTGCCAAGACATGTTGAAGCAACTGTATTTTGATCT ACTCCTTCCGTTCATAAATATAAGCTTTTCTGACCTTTCTGTGAATCGGATATATATAGA CACGTTTTAGTGTCTTTGTTCACTCATTTCACTCGTGTATGTAGTCCATATTGAAATATC CAAACC