- Transcript HORVU3Hr1G018200.8
- Transcript IDHORVU3Hr1G018200.8
- Gene IDHORVU3Hr1G018200
Barley RTD
Exon Structure of HORVU3Hr1G018200.8
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 47557249 | 47557136 | + |
| chr3H | 2 | 47557628 | 47557557 | + |
| chr3H | 3 | 47558736 | 47558463 | + |
| chr3H | 4 | 47559206 | 47559088 | + |
| chr3H | 5 | 47559495 | 47559319 | + |
| chr3H | 6 | 47559849 | 47559802 | + |
| chr3H | 7 | 47560084 | 47560020 | + |
| chr3H | 8 | 47560433 | 47560173 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os10g41730.1 | +2 | 2e-77 | 238 | 121/151 (80%) | protein|expressed protein |
| TAIR PP10 | AT5G43822 @ ARAPORT AT5G43822.1 @ TAIR |
+2 | 2e-33 | 123 | 66/154 (43%) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:17620830-17621868 FORWARD LENGTH=195 |
| BRACH PP3 | Bradi3g33790.2.p | +2 | 4e-90 | 270 | 131/151 (87%) | pacid=32818824 transcript=Bradi3g33790.2 locus=Bradi3g33790 ID=Bradi3g33790.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1130 bp)
>HORVU3Hr1G018200.8 1130 150831_barley_pseudomolecules TTGAAATCCCGGTTTTACCCCCGGCCAGCCTCCCTGCTCTTCCTCGAGGCGACACACCGG TGGACGGCGACGGTGGTAATCGACGGCGGAGGCTCCCTCCCGGCAACAACGACAACCATT GGAAGCTAGGGTTCATCACTGCACATTGGGGAATTTCGTGTGAAGGACCACTTCTTCATT CAACATGTTGACCTGAGCCCAGCCTATCATACGTGCCTCGTTCTCAGCAGCTGCAGACGT TCCCTAAGAAAATAGGCAAGCACTGCCGAGAAATCGATCGAGGACCGGGGTTGCTAAGGG AAACGAGATGAGCGGTTGATCGGGATGGAGGTTGTGGTGCGGAAGATGCAGCAGCGGGTG AGGAAGGCACGGGAGGAGACGGAGCGATGGGATGACCTCAACTCCCGCCTCCTGTCCCAG TTCTCCAATGCTGCCGCCATCATCACCCGCCTTCTGGTACGTACTTGGAGATGCTAAAAA TCATGGTATCCTGCGGTGTGTGCCCAACATCAGGGAGGATCTCTTGGGGGCACAGATGAG GAGCCTGGAGCTCATATTTGTTTCAATGAGGGAGACTCTGGAGGAGTTCAGTGGCATTGC CAAAGGTTTGAGCAAGGTACTGCGCGATGCTAATCAGATGGTGAGGGGTGGATTGGCACT CACTGGGAAACAATTGCAGTTACAAGTGGGAATTTTGCCAACTATTGCAGACTGCTTGGG TGGGCTACAAACACTGTCTGAAATGCACCAGGCTGAGTATGCGCTAAAATCATCAATCAT CTCTTTGTTGACATGGAAAAGCAGTTCAAGTGAAATCGCTGCAATGCGTCAACTCTTGGT AGACCAACCAAACATACCGAAAGATGAAGTGCAATCTGTCTTCGACATTATATTTGCAGA TGAAATTTGCTAAGTTGAGCATGCATCCTACTATTGGAAGCCCTATTGCCAAGACATGTT GAAGCAACTGTATTTTGATCTACTCCTTCCGTTCATAAATATAAGCTTTTCTGACCTTTC TGTGAATCGGATATATATAGACACGTTTTAGTGTCTTTGTTCACTCATTTCACTCGTGTA TGTAGTCCATATTGAAATATCCAAACCATGGTATATTTGTGAACGGAGGG