- Transcript HORVU3Hr1G018200.2
- Transcript IDHORVU3Hr1G018200.2
- Gene IDHORVU3Hr1G018200
Barley RTD
Exon Structure of HORVU3Hr1G018200.2
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 47557249 | 47557129 | + |
| chr3H | 2 | 47558732 | 47558463 | + |
| chr3H | 3 | 47559206 | 47559088 | + |
| chr3H | 4 | 47559495 | 47559319 | + |
| chr3H | 5 | 47559849 | 47559802 | + |
| chr3H | 6 | 47560084 | 47560017 | + |
| chr3H | 7 | 47560455 | 47560173 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os10g41730.1 | +2 | 7e-88 | 264 | 135/180 (75%) | protein|expressed protein |
| TAIR PP10 | AT5G43822 @ ARAPORT AT5G43822.1 @ TAIR |
+2 | 4e-35 | 127 | 76/180 (42%) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:17620830-17621868 FORWARD LENGTH=195 |
| BRACH PP3 | Bradi3g33790.2.p | +2 | 2e-94 | 280 | 147/180 (82%) | pacid=32818824 transcript=Bradi3g33790.2 locus=Bradi3g33790 ID=Bradi3g33790.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1086 bp)
>HORVU3Hr1G018200.2 1086 150831_barley_pseudomolecules GGCCCGCTTGAAATCCCGGTTTTACCCCCGGCCAGCCTCCCTGCTCTTCCTCGAGGCGAC ACACCGGTGGACGGCGACGGTGGTAATCGACGGCGGAGGCTCCCTCCCGGCAACAACGAC AGTTGACCTGAGCCCAGCCTATCATACGTGCCTCGTTCTCAGCAGCTGCAGACGTTCCCT AAGAAAATAGGCAAGCACTGCCGAGAAATCGATCGAGGACCGGGGTTGCTAAGGGAAACG AGATGAGCGGTTGATCGGGATGGAGGTTGTGGTGCGGAAGATGCAGCAGCGGGTGAGGAA GGCACGGGAGGAGACGGAGCGATGGGATGACCTCAACTCCCGCCTCCTGTCCCAGTTCTC CAATGCTGCCGCCATCATCACCCGCCTTCTGGTACTTGGAGATGCTAAAAATCATGGTAT CCTGCGGTGTGTGCCCAACATCAGGGAGGATCTCTTGGGGGCACAGATGAGGAGCCTGGA GCTCATATTTGTTTCAATGAGGGAGACTCTGGAGGAGTTCAGTGGCATTGCCAAAGGTTT GAGCAAGGTACTGCGCGATGCTAATCAGATGGTGAGGGGTGGATTGGCACTCACTGGGAA ACAATTGCAGTTACAAGTGGGAATTTTGCCAACTATTGCAGACTGCTTGGGTGGGCTACA AACACTGTCTGAAATGCACCAGGCTGAGTATGCGCTAAAATCATCAATCATCTCTTTGTT GACATGGAAAAGCAGCAGTTCAAGTGAAATCGCTGCAATGCGTCAACTCTTGGTAGACCA ACCAAACATACCGAAAGATGAAGTGCAATCTGTCTTCGACATTATATTTGCAGATGAAAT TTGCTAAGTTGAGCATGCATCCTACTATTGGAAGCCCTATTGCCAAGACATGTTGAAGCA ACTGTATTTTGATCTACTCCTTCCGTTCATAAATATAAGCTTTTCTGACCTTTCTGTGAA TCGGATATATATAGACACGTTTTAGTGTCTTTGTTCACTCATTTCACTCGTGTATGTAGT CCATATTGAAATATCCAAACCATGGTATATTTGTGAACGGAGGGAGTACTTTCTTATCTG AACAAA