Transcript Data
Barley RTD
Links



Exon Structure of HORVU3Hr1G018200.17

ChromosomeExonStartStopDirection
chr3H14755873247558601+
chr3H24755920647559088+
chr3H34755949547559319+
chr3H44755984947559802+
chr3H54756014047560020+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os10g41730.1 +1 2e-88 258 134/183 (73%) protein|expressed protein
TAIR PP10 AT5G43822 @ ARAPORT
AT5G43822.1 @ TAIR		 +1 9e-37 127 68/167 (41%) Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:17620830-17621868 FORWARD LENGTH=195
BRACH PP3 Bradi3g33790.1.p +1 3e-103 296 144/167 (86%) pacid=32818822 transcript=Bradi3g33790.1 locus=Bradi3g33790 ID=Bradi3g33790.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (597 bp)

>HORVU3Hr1G018200.17 597 150831_barley_pseudomolecules
ATGGAGGTTGTGGTGCGGAAGATGCAGCAGCGGGTGAGGAAGGCACGGGAGGAGACGGAG
CGATGGGATGACCTCAACTCCCGCCTCCTGTCCCAGTTCTCCAATGCTGCCGCCATCATC
ACCCGCCTTCTGGTACTTGGAGATGCTAAAAATCATGGTATCCTGCGGTGTGTGCCCAAC
ATCAGGGAGGATCTCTTGGGGGCACAGATGAGGAGCCTGGAGCTCATATTTGTTTCAATG
AGGGAGACTCTGGAGGAGTTCAGTGGCATTGCCAAAGGTTTGAGCAAGGTACTGCGCGAT
GCTAATCAGATGGTGAGGGGTGGATTGGCACTCACTGGGAAACAATTGCAGTTACAAGTG
GGAATTTTGCCAACTATTGCAGACTGCTTGGGTGGGCTACAAACACTGTCTGAAATGCAC
CAGGCTGAGTATGCGCTAAAATCATCAATCATCTCTTTGTTGACATGGAAAAGCAGTTCA
AGTGAAATCGCTGCAATGCGTCAACTCTTGGTAGACCAACCAAACATACCGAAAGATGAA
GGTAAGAAATGAAACAATAAAACTGAAGATATGGTTTTTAGTGATGGTTTGGTCTGA