- Transcript HORVU3Hr1G018200.16
- Transcript IDHORVU3Hr1G018200.16
- Gene IDHORVU3Hr1G018200
Barley RTD
Exon Structure of HORVU3Hr1G018200.16
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 47558732 | 47558601 | + |
| chr3H | 2 | 47559206 | 47559088 | + |
| chr3H | 3 | 47559506 | 47559319 | + |
| chr3H | 4 | 47559757 | 47559685 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os10g41730.1 | +1 | 2e-69 | 209 | 98/128 (77%) | protein|expressed protein |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi3g33790.1.p | +1 | 1e-76 | 228 | 113/154 (73%) | pacid=32818822 transcript=Bradi3g33790.1 locus=Bradi3g33790 ID=Bradi3g33790.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (512 bp)
>HORVU3Hr1G018200.16 512 150831_barley_pseudomolecules ATGGAGGTTGTGGTGCGGAAGATGCAGCAGCGGGTGAGGAAGGCACGGGAGGAGACGGAG CGATGGGATGACCTCAACTCCCGCCTCCTGTCCCAGTTCTCCAATGCTGCCGCCATCATC ACCCGCCTTCTGGTACTTGGAGATGCTAAAAATCATGGTATCCTGCGGTGTGTGCCCAAC ATCAGGGAGGATCTCTTGGGGGCACAGATGAGGAGCCTGGAGCTCATATTTGTTTCAATG AGGGAGACTCTGGAGGAGTTCAGTGGCATTGCCAAAGGTTTGAGCAAGGTACTGCGCGAT GCTAATCAGATGGTGAGGGGTGGATTGGCACTCACTGGGAAACAATTGCAGTTACAAGTG GGAATTTTGCCAACTATTGCAGACTGCTTGGGTGGGCTACAAACACTGTCTGAAATGCAC CAGGCTGAGTACGAAACAAGGTGTCATATGTTTAAGATATTATTTGCTTTCTTTTCTGAC AATTCATTGATATGCATCTTACTCTTGTTATC