Transcript Data
Barley RTD
Links



Exon Structure of HORVU3Hr1G018200.15

ChromosomeExonStartStopDirection
chr3H14755873247558003+
chr3H24755920647559088+
chr3H34755954547559319+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os10g41730.1 +2 6e-67 210 98/128 (77%) protein|expressed protein
TAIR PP10None-----
BRACH PP3 Bradi3g33790.1.p +2 5e-73 226 109/128 (85%) pacid=32818822 transcript=Bradi3g33790.1 locus=Bradi3g33790 ID=Bradi3g33790.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (1076 bp)

>HORVU3Hr1G018200.15 1076 150831_barley_pseudomolecules
CTCATTTTCCACTTGGACTGTTAATGCTCGTGGGCTCGTGGCATATGATGTGAAGTTGTG
TTCTGTTTTCATCAATGCATAGTTCTTGAAGTGCGTAAGCTGCATTTAAAGATATTAGTA
ATGACCTTTTTCTATAATCACTGCATTGTTCGACTCCAACTCCCATATCTTTTAAGATAA
TAAAGTGCTTACAAACCAAAAATAAAGTTTATGTGGGGTGAGATCATAGTGAGGGTAAGT
GTACCAAATAGATTCGTTTCTACTGATCAAATAAAAAAAATTGTGTTGCTCATCGAAGTG
CACGAACAACCTTGCATAGTTAGTTTGAGACAGCCATAATCATCTTGAGTTTGTGTGCTC
ACATAATTCTGCTCCCAAATAGAAAAATATTTATATGATTCCTGTTAGCTCAAAGTATGT
TAATTTTTGGCCTCAAAATTTCATTGCCTCTAATGGTCAGGTTGACCTGAGCCCAGCCTA
TCATACGTGCCTCGTTCTCAGCAGCTGCAGACGTTCCCTAAGAAAATAGGCAAGCACTGC
CGAGAAATCGATCGAGGACCGGGGTTGCTAAGGGAAACGAGATGAGCGGTTGATCGGGAT
GGAGGTTGTGGTGCGGAAGATGCAGCAGCGGGTGAGGAAGGCACGGGAGGAGACGGAGCG
ATGGGATGACCTCAACTCCCGCCTCCTGTCCCAGTTCTCCAATGCTGCCGCCATCATCAC
CCGCCTTCTGGTACTTGGAGATGCTAAAAATCATGGTATCCTGCGGTGTGTGCCCAACAT
CAGGGAGGATCTCTTGGGGGCACAGATGAGGAGCCTGGAGCTCATATTTGTTTCAATGAG
GGAGACTCTGGAGGAGTTCAGTGGCATTGCCAAAGGTTTGAGCAAGGTACTGCGCGATGC
TAATCAGATGGTGAGGGGTGGATTGGCACTCACTGGGAAACAATTGCAGTTACAAGTGGG
AATTTTGCCAACTATTGCAGACTGCTTGGGTGGGCTACAAACACTGTCTGAAATGCACCA
GGCTGAGTACGAAACAAGTGACATACCTTCGCCAAACCTACTCTGTTTTTAGAACA