Transcript Data
Barley RTD
Links



Exon Structure of HORVU3Hr1G018200.14

ChromosomeExonStartStopDirection
chr3H14755762847557560+
chr3H24755873547558463+
chr3H34755983247559088+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os10g41730.1 +1 2e-47 108 52/69 (75%) protein|expressed protein
TAIR PP10None-----
BRACH PP3 Bradi3g33790.1.p +1 3e-52 120 59/69 (86%) pacid=32818822 transcript=Bradi3g33790.1 locus=Bradi3g33790 ID=Bradi3g33790.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (1087 bp)

>HORVU3Hr1G018200.14 1087 150831_barley_pseudomolecules
ATTGGAAGCTAGGGTTCATCACTGCACATTGGGGAATTTCGTGTGAAGGACCACTTCTTC
ATTCAACATGTTGACCTGAGCCCAGCCTATCATACGTGCCTCGTTCTCAGCAGCTGCAGA
CGTTCCCTAAGAAAATAGGCAAGCACTGCCGAGAAATCGATCGAGGACCGGGGTTGCTAA
GGGAAACGAGATGAGCGGTTGATCGGGATGGAGGTTGTGGTGCGGAAGATGCAGCAGCGG
GTGAGGAAGGCACGGGAGGAGACGGAGCGATGGGATGACCTCAACTCCCGCCTCCTGTCC
CAGTTCTCCAATGCTGCCGCCATCATCACCCGCCTTCTGGTAGTACTTGGAGATGCTAAA
AATCATGGTATCCTGCGGTGTGTGCCCAACATCAGGGAGGATCTCTTGGGGGCACAGATG
AGGAGCCTGGAGCTCATATTTGTTTCAATGAGGGAGACTCTGTAAGCTGCTGTCACTGTT
GTTACAACCGCTTTTGGTTTGGTCCAACTCTAGAAGCATATGCAACGGAATTGTTTCGAG
TTGGTGTTACAATGTTGCTGCATTTTTTTTCAGGGAGGAGTTCAGTGGCATTGCCAAAGG
TTTGAGCAAGGTACTGCGCGATGCTAATCAGATGGTGAGGGGTGGATTGGCACTCACTGG
GAAACAATTGCAGTTACAAGTGGGAATTTTGCCAACTATTGCAGACTGCTTGGGTGGGCT
ACAAACACTGTCTGAAATGCACCAGGCTGAGTACGAAACAAGTGACATACCTTCGCCAAA
CCTACTCTGTTTTTAGAACATCCTCATTTTCTTAATAAATAATACAAAGCTTACTCATTT
GACTGTCGCGCTATTGCTGATATGTATATTTGCCACCTCATATATGGGAATCACCTATTT
AAACCAGTACCATCTCTCTTGTAGCATTTTGTTTTTGCTGGTGTCATATGTTTAAGATAT
TATTTGCTTTCTTTTCTGACAATTCATTGATATGCATCTTACTCTTGTTATCATAGCAGA
AGCTACTTCTTTACTGATAATACATTGATATGCCAGGTATGCGCTAAAATCATCAATCAT
CTCTTTG