- Transcript HORVU3Hr1G018200.13
- Transcript IDHORVU3Hr1G018200.13
- Gene IDHORVU3Hr1G018200
Barley RTD
Exon Structure of HORVU3Hr1G018200.13
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 47557249 | 47557228 | + |
| chr3H | 2 | 47557628 | 47557557 | + |
| chr3H | 3 | 47558732 | 47558504 | + |
| chr3H | 4 | 47559206 | 47559088 | + |
| chr3H | 5 | 47559495 | 47559319 | + |
| chr3H | 6 | 47559849 | 47559802 | + |
| chr3H | 7 | 47560084 | 47560020 | + |
| chr3H | 8 | 47560480 | 47560173 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os10g41730.1 | +3 | 1e-95 | 283 | 143/179 (80%) | protein|expressed protein |
| TAIR PP10 | AT5G43822 @ ARAPORT AT5G43822.1 @ TAIR |
+3 | 3e-43 | 148 | 77/180 (43%) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:17620830-17621868 FORWARD LENGTH=195 |
| BRACH PP3 | Bradi3g33790.2.p | +3 | 4e-110 | 319 | 156/179 (87%) | pacid=32818824 transcript=Bradi3g33790.2 locus=Bradi3g33790 ID=Bradi3g33790.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1040 bp)
>HORVU3Hr1G018200.13 1040 150831_barley_pseudomolecules CTCCCTCCCGGCAACAACGACAACCATTGGAAGCTAGGGTTCATCACTGCACATTGGGGA ATTTCGTGTGAAGGACCACTTCTTCATTCAACATCAGCTGCAGACGTTCCCTAAGAAAAT AGGCAAGCACTGCCGAGAAATCGATCGAGGACCGGGGTTGCTAAGGGAAACGAGATGAGC GGTTGATCGGGATGGAGGTTGTGGTGCGGAAGATGCAGCAGCGGGTGAGGAAGGCACGGG AGGAGACGGAGCGATGGGATGACCTCAACTCCCGCCTCCTGTCCCAGTTCTCCAATGCTG CCGCCATCATCACCCGCCTTCTGGTACTTGGAGATGCTAAAAATCATGGTATCCTGCGGT GTGTGCCCAACATCAGGGAGGATCTCTTGGGGGCACAGATGAGGAGCCTGGAGCTCATAT TTGTTTCAATGAGGGAGACTCTGGAGGAGTTCAGTGGCATTGCCAAAGGTTTGAGCAAGG TACTGCGCGATGCTAATCAGATGGTGAGGGGTGGATTGGCACTCACTGGGAAACAATTGC AGTTACAAGTGGGAATTTTGCCAACTATTGCAGACTGCTTGGGTGGGCTACAAACACTGT CTGAAATGCACCAGGCTGAGTATGCGCTAAAATCATCAATCATCTCTTTGTTGACATGGA AAAGCAGTTCAAGTGAAATCGCTGCAATGCGTCAACTCTTGGTAGACCAACCAAACATAC CGAAAGATGAAGTGCAATCTGTCTTCGACATTATATTTGCAGATGAAATTTGCTAAGTTG AGCATGCATCCTACTATTGGAAGCCCTATTGCCAAGACATGTTGAAGCAACTGTATTTTG ATCTACTCCTTCCGTTCATAAATATAAGCTTTTCTGACCTTTCTGTGAATCGGATATATA TAGACACGTTTTAGTGTCTTTGTTCACTCATTTCACTCGTGTATGTAGTCCATATTGAAA TATCCAAACCATGGTATATTTGTGAACGGAGGGAGTACTTTCTTATCTGAACAAAGTGTT GAGTAAATAGGCAATTTTCC