Transcript Data
Barley RTD
Links



Exon Structure of HORVU3Hr1G018200.12

ChromosomeExonStartStopDirection
chr3H14755724947557216+
chr3H24755873247558504+
chr3H34755920647559088+
chr3H44755949547559319+
chr3H54755984947559798+
chr3H64756008447560020+
chr3H74756048147560173+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os10g41730.1 +3 1e-70 206 96/127 (76%) protein|expressed protein
TAIR PP10None-----
BRACH PP3 Bradi3g33790.2.p +3 1e-81 220 107/127 (84%) pacid=32818824 transcript=Bradi3g33790.2 locus=Bradi3g33790 ID=Bradi3g33790.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (985 bp)

>HORVU3Hr1G018200.12 985 150831_barley_pseudomolecules
CGACGGCGGAGGCTCCCTCCCGGCAACAACGACACAGCTGCAGACGTTCCCTAAGAAAAT
AGGCAAGCACTGCCGAGAAATCGATCGAGGACCGGGGTTGCTAAGGGAAACGAGATGAGC
GGTTGATCGGGATGGAGGTTGTGGTGCGGAAGATGCAGCAGCGGGTGAGGAAGGCACGGG
AGGAGACGGAGCGATGGGATGACCTCAACTCCCGCCTCCTGTCCCAGTTCTCCAATGCTG
CCGCCATCATCACCCGCCTTCTGGTACTTGGAGATGCTAAAAATCATGGTATCCTGCGGT
GTGTGCCCAACATCAGGGAGGATCTCTTGGGGGCACAGATGAGGAGCCTGGAGCTCATAT
TTGTTTCAATGAGGGAGACTCTGGAGGAGTTCAGTGGCATTGCCAAAGGTTTGAGCAAGG
TACTGCGCGATGCTAATCAGATGGTGAGGGGTGGATTGGCACTCACTGGGAAACAATTGC
AGTTACAAGTGGGAATTTTGCCAACTATTGCAGACTGCTTGGGTGGGCTACAAACACTGT
CTGAAATGCACCAGGCTGACCAGGTATGCGCTAAAATCATCAATCATCTCTTTGTTGACA
TGGAAAAGCAGTTCAAGTGAAATCGCTGCAATGCGTCAACTCTTGGTAGACCAACCAAAC
ATACCGAAAGATGAAGTGCAATCTGTCTTCGACATTATATTTGCAGATGAAATTTGCTAA
GTTGAGCATGCATCCTACTATTGGAAGCCCTATTGCCAAGACATGTTGAAGCAACTGTAT
TTTGATCTACTCCTTCCGTTCATAAATATAAGCTTTTCTGACCTTTCTGTGAATCGGATA
TATATAGACACGTTTTAGTGTCTTTGTTCACTCATTTCACTCGTGTATGTAGTCCATATT
GAAATATCCAAACCATGGTATATTTGTGAACGGAGGGAGTACTTTCTTATCTGAACAAAG
TGTTGAGTAAATAGGCAATTTTCCG