Transcript Data
Barley RTD
Links



Exon Structure of HORVU3Hr1G018200.11

ChromosomeExonStartStopDirection
chr3H14755724947557190+
chr3H24755920647559088+
chr3H34755949547559319+
chr3H44755984947559802+
chr3H54756008447560020+
chr3H64756040447560173+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os10g41730.1 +1 3e-80 239 122/161 (76%) protein|expressed protein
TAIR PP10 AT5G43822 @ ARAPORT
AT5G43822.1 @ TAIR		 +1 6e-35 123 66/171 (39%) Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:17620830-17621868 FORWARD LENGTH=195
BRACH PP3 Bradi3g33790.2.p +1 1e-92 271 132/161 (82%) pacid=32818824 transcript=Bradi3g33790.2 locus=Bradi3g33790 ID=Bradi3g33790.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (701 bp)

>HORVU3Hr1G018200.11 701 150831_barley_pseudomolecules
CACCGGTGGACGGCGACGGTGGTAATCGACGGCGGAGGCTCCCTCCCGGCAACAACGACA
GTACTTGGAGATGCTAAAAATCATGGTATCCTGCGGTGTGTGCCCAACATCAGGGAGGAT
CTCTTGGGGGCACAGATGAGGAGCCTGGAGCTCATATTTGTTTCAATGAGGGAGACTCTG
GAGGAGTTCAGTGGCATTGCCAAAGGTTTGAGCAAGGTACTGCGCGATGCTAATCAGATG
GTGAGGGGTGGATTGGCACTCACTGGGAAACAATTGCAGTTACAAGTGGGAATTTTGCCA
ACTATTGCAGACTGCTTGGGTGGGCTACAAACACTGTCTGAAATGCACCAGGCTGAGTAT
GCGCTAAAATCATCAATCATCTCTTTGTTGACATGGAAAAGCAGTTCAAGTGAAATCGCT
GCAATGCGTCAACTCTTGGTAGACCAACCAAACATACCGAAAGATGAAGTGCAATCTGTC
TTCGACATTATATTTGCAGATGAAATTTGCTAAGTTGAGCATGCATCCTACTATTGGAAG
CCCTATTGCCAAGACATGTTGAAGCAACTGTATTTTGATCTACTCCTTCCGTTCATAAAT
ATAAGCTTTTCTGACCTTTCTGTGAATCGGATATATATAGACACGTTTTAGTGTCTTTGT
TCACTCATTTCACTCGTGTATGTAGTCCATATTGAAATATC