Transcript Data
Barley RTD
Links



Exon Structure of HORVU3Hr1G018200.1

ChromosomeExonStartStopDirection
chr3H14755724947557125+
chr3H24755873247558504+
chr3H34755920647559088+
chr3H44755978747559319+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os10g41730.1 +1 1e-67 210 98/128 (77%) protein|expressed protein
TAIR PP10None-----
BRACH PP3 Bradi3g33790.1.p +1 9e-74 226 109/128 (85%) pacid=32818822 transcript=Bradi3g33790.1 locus=Bradi3g33790 ID=Bradi3g33790.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (942 bp)

>HORVU3Hr1G018200.1 942 150831_barley_pseudomolecules
GTCGGGCCCGCTTGAAATCCCGGTTTTACCCCCGGCCAGCCTCCCTGCTCTTCCTCGAGG
CGACACACCGGTGGACGGCGACGGTGGTAATCGACGGCGGAGGCTCCCTCCCGGCAACAA
CGACACAGCTGCAGACGTTCCCTAAGAAAATAGGCAAGCACTGCCGAGAAATCGATCGAG
GACCGGGGTTGCTAAGGGAAACGAGATGAGCGGTTGATCGGGATGGAGGTTGTGGTGCGG
AAGATGCAGCAGCGGGTGAGGAAGGCACGGGAGGAGACGGAGCGATGGGATGACCTCAAC
TCCCGCCTCCTGTCCCAGTTCTCCAATGCTGCCGCCATCATCACCCGCCTTCTGGTACTT
GGAGATGCTAAAAATCATGGTATCCTGCGGTGTGTGCCCAACATCAGGGAGGATCTCTTG
GGGGCACAGATGAGGAGCCTGGAGCTCATATTTGTTTCAATGAGGGAGACTCTGGAGGAG
TTCAGTGGCATTGCCAAAGGTTTGAGCAAGGTACTGCGCGATGCTAATCAGATGGTGAGG
GGTGGATTGGCACTCACTGGGAAACAATTGCAGTTACAAGTGGGAATTTTGCCAACTATT
GCAGACTGCTTGGGTGGGCTACAAACACTGTCTGAAATGCACCAGGCTGAGTACGAAACA
AGTGACATACCTTCGCCAAACCTACTCTGTTTTTAGAACATCCTCATTTTCTTAATAAAT
AATACAAAGCTTACTCATTTGACTGTCGCGCTATTGCTGATATGTATATTTGCCACCTCA
TATATGGGAATCACCTATTTAAACCAGTACCATCTCTCTTGTAGCATTTTGTTTTTGCTG
GTGTCATATGTTTAAGATATTATTTGCTTTCTTTTCTGACAATTCATTGATATGCATCTT
ACTCTTGTTATCATAGCAGAAGCTACTTCTTTACTGATAATA