- Transcript HORVU2Hr1G040410.4
- Transcript IDHORVU2Hr1G040410.4
- Gene IDHORVU2Hr1G040410
Barley RTD
Exon Structure of HORVU2Hr1G040410.4
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 196197765 | 196197203 | - |
| chr2H | 2 | 196198594 | 196198527 | - |
| chr2H | 3 | 196200357 | 196200244 | - |
| chr2H | 4 | 196200943 | 196200894 | - |
| chr2H | 5 | 196201575 | 196201168 | - |
| chr2H | 6 | 196202024 | 196201954 | - |
| chr2H | 7 | 196203345 | 196203171 | - |
| chr2H | 8 | 196204297 | 196204201 | - |
| chr2H | 9 | 196205297 | 196204456 | - |
| chr2H | 10 | 196205912 | 196205811 | - |
| chr2H | 11 | 196206098 | 196206017 | - |
| chr2H | 12 | 196206760 | 196206413 | - |
| chr2H | 13 | 196206829 | 196206814 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g37610.1 | +3 | 0.0 | 1279 | 661/894 (74%) | protein|B3 DNA binding domain containing protein, putative, expressed |
| TAIR PP10 | AT4G32010 @ ARAPORT AT4G32010.1 @ TAIR |
+3 | 2e-140 | 439 | 235/445 (53%) | Symbols: HSL1, HSI2-L1, VAL2 | HSI2-like 1 | chr4:15481231-15484897 FORWARD LENGTH=780 |
| BRACH PP3 | Bradi1g24720.1.p | +3 | 0.0 | 1357 | 711/903 (79%) | pacid=32795970 transcript=Bradi1g24720.1 locus=Bradi1g24720 ID=Bradi1g24720.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2936 bp)
>HORVU2Hr1G040410.4 2936 150831_barley_pseudomolecules CTAGCAATAGTACTCCCATGGTGGGAGGTGAGTCCGAGGCGTTTCGTGTACACGTAGCGA GAGCAATCCAGACGCTGGGTACTACTACTACTTTTCTGCGCCTCGCTTTAAAAGCAGCCC TCCTCCTCCTCCCCTCGCCTCGCCCCTCCCCTCCCCCCCCCNNNNNNNNNNNNNNNNNNN CGTCCAAGCAGCCGCAGCAGCAGCACCAACAGCAGCAGCAGCAGGGCCCTTCGCCCGCCT CGCTCCAGCAGCGGCCCAGGATCTGCTTCAACGCGCACTGCAAGGACCCCAAATCCGAGG GCGCGCGCCACCGCGGCTGGCGCCTCCGCTCCGGCGACTACGCCGAGCTCTGCGACCGAT GCTATGGTTCGTTCGAGCATGGGACCTTCTGCGAGACGTTCCACTCGGAGGTGGCCGGAT GGAGGAAATGCGAAGCGTGCGGGAAGAGGCTACATTGTGGGTGCATCGTCTCCGTCCATG CGTATGCGCTGCTCGACGCCGGCGGAGTTGACTGCATCCTATGTGCTCGCAAGTCGTATG TGGCAATGGCACCAAGTCAGATGTGGTCAACTCCTACTGTGCATATGCCTCAAAATGTTG CTGACAGAAAGGACAGTTATGTAAAGAGTTGGAGACCTCCTGCGGGCCAGATTTCAAGTC AGTGGCGACAGAATCACCAGCTGTGGAACATGTCCAGTATACAGACGGACTTGCAGCAAC GTCTAGCTTATGAGTTTGATAGGCCAAGTGGCAGTGAAAAATTACCTCCAGGGCGCACTT TTATTCATGCCCAGGAAAAGAAATCCGATGACATGCATGACAGACCAACGACACCTGCCG GCATGGGCCAGATTATAAGGGACAGATATGCCAATGGGCTCGGACAGCAAACAAACATGG ATCCGACACACTCCTCTACGCCCTACCAGAGAGAAGGACCAAATCAAAATAGCCTTCATG ATCCTAGTCACCATGTAGGAGAAAGTGACCCTTTGTCTTCAAGGAAAGGGATAGTTTCAG ATGGTGGTTCTACTGCATCTACTGGCTTTAAGCTTGATCCACATCATCCATCCATTCTAA AGGATGATGCGGCATCAACCCTGCCGACAATGGGTGGCTACACTATCACTAATTATCCAC CGGTACCTGGACGAAGCGACCATCTCAGAATCATACCTAATAATCCGCAACAACCACCCA CCACGGTGCCCGTCTCAGTAGTGCAGAAACAGTTCTATTCCCATAGTGTCATTGAGCCCG ACTACCAAGCGCAATTCCGTAATGGAAAGCCCAGAATGGAGTCCAGAATGGATGCAAAGG CGAGATCTCAATTACTTCCCCGCTACTGGCCTAGAATAACAGATAAAGAGCTACAGCACT TATCGGGAGATTCGAATTCTGTTATTACTCCTTTGTTCGAGAAAATGTTAAGTGCCAGTG ATGCTGGTCGGATTGGTCGTTTGGTGTTGCCAAAGAAATGCGCCGAGGCATACTTCCCCC CAATCTCTCAGCCAGAAGGACTTCCCTTAAAAGTTCAGGATGCCAGTGGTAAGGAATGGG TGTTCCAGTTCCGTTTCTGGCCCAATAATAACAGCAGGATGTATGTATTGGAGGGTGTCA CACCTTGCATTCAGTCGATGCACTTACAAGCGGGCGATACAGTAAGTTTCAGCCGAATAG ATCCAGAAGGGAAGCTGGTCATGGGATTCAGAAAGACAAAGACTCAAGAACAGATATTCC GCCAGGAAGAACCAACAAAGCCTGCAAATGCTGCCCCAAATCTTCCAGATGTGAATGTTA ATGTCACCGCTCCAGATTCTAGTCCAAATTCTGCGTTGGCGCGGCCAAATAAAGTCAACA CAGAGAACAAAGATACTAGCCCTGTGGAACAAGCAGCTGCCTGTAAAATGGAGAAAACTG GAGTAGCACAAAAGGAAGGGCAGGGAACTGTTCGCTCATCCCCTGGACCTGTCAAGAGAA AAGCAACATCTCTTGGTTCGAAGATTAAACGGTTCCGGATTGATAACGAGGAATCTATGG AATTGAAGATAACATGGGAGGAGGCTCAAGAATTGCTTCGACCTCCTCTGAAGGCCCCAT CGGTTGTTATTGTTGATGGCCATGAGTTTGAGGAATATGAGGAGCCACCAGTACTTGGGA GGAAGACATATTTTGTTACTGACCAATCAGGTGAGAATCATCAATGGGCTCAGTGTGAGG ATTGTTCCAAATGGCGGAAACTGCCAGTAGACGCCCTTTTGCCCTCTAAGTGGACCTGTT CTGACAATAAATGGGATCCTGAAAGGACGACTTGTGTCTCTCCACAAGAAGCAAGCATGG AGCAACTTGCAGAGTTGATTCCTATAAAAGCAGGTGCTGCAAAAAAGGCTAAACTGAAGA TGGAAACTGACAGTATTGATGTTTCGGATGGGCTGGACACTCTGGCAAACCTTGCTATTC TTGGTGAGGGTGAATCTCTCCCTTCCCAGCCAACTACAAAGCACCCCCGCCATCGCCCTG GCTGCTCGTGCATTGTGTGCATTCAGCCTCCTAGTGGGAAGGGCCCAAAGCACAAGCAGA CGTGCACCTGCAATGTATGTATGACGGTGCGCCGTCGTTTTAGGACACTGATGCTTCGGC GTGAGAAGCGTGCGTCTGAGAAAGAATCGGAAGAGCCGCCTCGCAAGAAAGAGCAAGGCC AGTCGAGCGAGTCGATTCCACAAGATGTGCTGCCGGCTAGCACCAGTCCTACTAGCACTC CCCAAAACGTGAACGGAAATGGTGAAGATGCGGAAGAAACCGTGGAGCATAGCATGGTAT CCTCTCCTATGAAGAACCAGATTGACCTGAACATTCAGCCTGAACGGGAAGACGAGCAGT CACCAAAATCAGATGCGGTCGGTGCAATGAGACTTCCCCGAGAGAACGCAGCCTAG