- Transcript HORVU2Hr1G040410.2
- Transcript IDHORVU2Hr1G040410.2
- Gene IDHORVU2Hr1G040410
Barley RTD
Exon Structure of HORVU2Hr1G040410.2
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 196197765 | 196197203 | - |
| chr2H | 2 | 196198594 | 196198527 | - |
| chr2H | 3 | 196200357 | 196200244 | - |
| chr2H | 4 | 196200943 | 196200894 | - |
| chr2H | 5 | 196201563 | 196201168 | - |
| chr2H | 6 | 196202024 | 196201954 | - |
| chr2H | 7 | 196203345 | 196203171 | - |
| chr2H | 8 | 196204297 | 196204201 | - |
| chr2H | 9 | 196205297 | 196204456 | - |
| chr2H | 10 | 196205553 | 196205511 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g37610.1 | +2 | 0.0 | 1095 | 582/803 (72%) | protein|B3 DNA binding domain containing protein, putative, expressed |
| TAIR PP10 | AT4G32010 @ ARAPORT AT4G32010.1 @ TAIR |
+2 | 4e-142 | 438 | 233/439 (53%) | Symbols: HSL1, HSI2-L1, VAL2 | HSI2-like 1 | chr4:15481231-15484897 FORWARD LENGTH=780 |
| BRACH PP3 | Bradi1g24720.1.p | +2 | 0.0 | 1147 | 620/807 (77%) | pacid=32795970 transcript=Bradi1g24720.1 locus=Bradi1g24720 ID=Bradi1g24720.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2419 bp)
>HORVU2Hr1G040410.2 2419 150831_barley_pseudomolecules AGCTGCACTCTAGCTGTGCTGGCTGGTTGCAAGCATTAGTGAGGCACCAAGTCAGATGTG GTCAACTCCTACTGTGCATATGCCTCAAAATGTTGCTGACAGAAAGGACAGTTATGTAAA GAGTTGGAGACCTCCTGCGGGCCAGATTTCAAGTCAGTGGCGACAGAATCACCAGCTGTG GAACATGTCCAGTATACAGACGGACTTGCAGCAACGTCTAGCTTATGAGTTTGATAGGCC AAGTGGCAGTGAAAAATTACCTCCAGGGCGCACTTTTATTCATGCCCAGGAAAAGAAATC CGATGACATGCATGACAGACCAACGACACCTGCCGGCATGGGCCAGATTATAAGGGACAG ATATGCCAATGGGCTCGGACAGCAAACAAACATGGATCCGACACACTCCTCTACGCCCTA CCAGAGAGAAGGACCAAATCAAAATAGCCTTCATGATCCTAGTCACCATGTAGGAGAAAG TGACCCTTTGTCTTCAAGGAAAGGGATAGTTTCAGATGGTGGTTCTACTGCATCTACTGG CTTTAAGCTTGATCCACATCATCCATCCATTCTAAAGGATGATGCGGCATCAACCCTGCC GACAATGGGTGGCTACACTATCACTAATTATCCACCGGTACCTGGACGAAGCGACCATCT CAGAATCATACCTAATAATCCGCAACAACCACCCACCACGGTGCCCGTCTCAGTAGTGCA GAAACAGTTCTATTCCCATAGTGTCATTGAGCCCGACTACCAAGCGCAATTCCGTAATGG AAAGCCCAGAATGGAGTCCAGAATGGATGCAAAGGCGAGATCTCAATTACTTCCCCGCTA CTGGCCTAGAATAACAGATAAAGAGCTACAGCACTTATCGGGAGATTCGAATTCTGTTAT TACTCCTTTGTTCGAGAAAATGTTAAGTGCCAGTGATGCTGGTCGGATTGGTCGTTTGGT GTTGCCAAAGAAATGCGCCGAGGCATACTTCCCCCCAATCTCTCAGCCAGAAGGACTTCC CTTAAAAGTTCAGGATGCCAGTGGTAAGGAATGGGTGTTCCAGTTCCGTTTCTGGCCCAA TAATAACAGCAGGATGTATGTATTGGAGGGTGTCACACCTTGCATTCAGTCGATGCACTT ACAAGCGGGCGATACAGTAAGTTTCAGCCGAATAGATCCAGAAGGGAAGCTGGTCATGGG ATTCAGAAAGACAAAGACTCAAGAACAGGAAGAACCAACAAAGCCTGCAAATGCTGCCCC AAATCTTCCAGATGTGAATGTTAATGTCACCGCTCCAGATTCTAGTCCAAATTCTGCGTT GGCGCGGCCAAATAAAGTCAACACAGAGAACAAAGATACTAGCCCTGTGGAACAAGCAGC TGCCTGTAAAATGGAGAAAACTGGAGTAGCACAAAAGGAAGGGCAGGGAACTGTTCGCTC ATCCCCTGGACCTGTCAAGAGAAAAGCAACATCTCTTGGTTCGAAGATTAAACGGTTCCG GATTGATAACGAGGAATCTATGGAATTGAAGATAACATGGGAGGAGGCTCAAGAATTGCT TCGACCTCCTCTGAAGGCCCCATCGGTTGTTATTGTTGATGGCCATGAGTTTGAGGAATA TGAGGAGCCACCAGTACTTGGGAGGAAGACATATTTTGTTACTGACCAATCAGGTGAGAA TCATCAATGGGCTCAGTGTGAGGATTGTTCCAAATGGCGGAAACTGCCAGTAGACGCCCT TTTGCCCTCTAAGTGGACCTGTTCTGACAATAAATGGGATCCTGAAAGGACGACTTGTGT CTCTCCACAAGAAGCAAGCATGGAGCAACTTGCAGAGTTGATTCCTATAAAAGCAGGTGC TGCAAAAAAGGCTAAACTGAAGATGGAAACTGACAGTATTGATGTTTCGGATGGGCTGGA CACTCTGGCAAACCTTGCTATTCTTGGTGAGGGTGAATCTCTCCCTTCCCAGCCAACTAC AAAGCACCCCCGCCATCGCCCTGGCTGCTCGTGCATTGTGTGCATTCAGCCTCCTAGTGG GAAGGGCCCAAAGCACAAGCAGACGTGCACCTGCAATGTATGTATGACGGTGCGCCGTCG TTTTAGGACACTGATGCTTCGGCGTGAGAAGCGTGCGTCTGAGAAAGAATCGGAAGAGCC GCCTCGCAAGAAAGAGCAAGGCCAGTCGAGCGAGTCGATTCCACAAGATGTGCTGCCGGC TAGCACCAGTCCTACTAGCACTCCCCAAAACGTGAACGGAAATGGTGAAGATGCGGAAGA AACCGTGGAGCATAGCATGGTATCCTCTCCTATGAAGAACCAGATTGACCTGAACATTCA GCCTGAACGGGAAGACGAGCAGTCACCAAAATCAGATGCGGTCGGTGCAATGAGACTTCC CCGAGAGAACGCAGCCTAG