Transcript Data
Barley RTD
Links



Exon Structure of HORVU2Hr1G040410.1

ChromosomeExonStartStopDirection
chr2H1196197811196197203-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os07g37610.1 +1 9e-65 216 134/187 (72%) protein|B3 DNA binding domain containing protein, putative, expressed
TAIR PP10None-----
BRACH PP3 Bradi1g24720.3.p +1 2e-67 222 122/181 (67%) pacid=32795971 transcript=Bradi1g24720.3 locus=Bradi1g24720 ID=Bradi1g24720.3.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (609 bp)

>HORVU2Hr1G040410.1 609 150831_barley_pseudomolecules
ATGAGGACTACATATAATGATTGCTTTTGCTTAATTGACATTGCAGGTGCTGCAAAAAAG
GCTAAACTGAAGATGGAAACTGACAGTATTGATGTTTCGGATGGGCTGGACACTCTGGCA
AACCTTGCTATTCTTGGTGAGGGTGAATCTCTCCCTTCCCAGCCAACTACAAAGCACCCC
CGCCATCGCCCTGGCTGCTCGTGCATTGTGTGCATTCAGCCTCCTAGTGGGAAGGGCCCA
AAGCACAAGCAGACGTGCACCTGCAATGTATGTATGACGGTGCGCCGTCGTTTTAGGACA
CTGATGCTTCGGCGTGAGAAGCGTGCGTCTGAGAAAGAATCGGAAGAGCCGCCTCGCAAG
AAAGAGCAAGGCCAGTCGAGCGAGTCGATTCCACAAGATGTGCTGCCGGCTAGCACCAGT
CCTACTAGCACTCCCCAAAACGTGAACGGAAATGGTGAAGATGCGGAAGAAACCGTGGAG
CATAGCATGGTATCCTCTCCTATGAAGAACCAGATTGACCTGAACATTCAGCCTGAACGG
GAAGACGAGCAGTCACCAAAATCAGATGCGGTCGGTGCAATGAGACTTCCCCGAGAGAAC
GCAGCCTAG