- Transcript HORVU2Hr1G036050.5
- Transcript IDHORVU2Hr1G036050.5
- Gene IDHORVU2Hr1G036050
Barley RTD
Exon Structure of HORVU2Hr1G036050.5
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 157574796 | 157574053 | - |
| chr2H | 2 | 157578801 | 157578220 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g39620.2 | +1 | 5e-65 | 216 | 171/259 (66%) | protein|C2 domain containing protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g23257.3.p | +1 | 4e-81 | 258 | 204/257 (79%) | pacid=32801215 transcript=Bradi1g23257.3 locus=Bradi1g23257 ID=Bradi1g23257.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1326 bp)
>HORVU2Hr1G036050.5 1326 150831_barley_pseudomolecules ATGGAGTCGCAGCAGCAGCAGCAGCAGATGGAGGCGGTTTCTGCGCCGGCCGCCGCTACG AACGGGGGCGGGGAGCTGATCGGGTACGTGGACGTGCACGTGCGGAGCGCGCGGGACATT CAGAACATCTGCATCTACCACAAGCAGGATGTGTACGCGCGCCTGTCGCTGCCGGGGGAG GGCGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATGGAGTTCCCTGAC ATGAATCTTGTGGAGGAAAACCAGATTATGCTCTCGGAATATGTTGGTCTGCCGTGCACG GCCATGGAAACGCAGAGCTCCGAGAGCCTCCTGACCTCAGAGGACGTGGATGGCGCCGCC ACCGAGTCCCACGACGCCGGCGTGCGAGTTGTGCAGAGCTTCTCGACGGACTACAGCACC GCCGACTCCTCGGCCGGCGCCTTCCGGAGCGAGACGGCAGTCAGCAGCGTGTCCACCACG GAGTCCCCGGCCGCGGCCGTCCCGGCTACCCCGCAGTCCAACCCGTCCGAGCCGTCAGGA AACGCCCTCTCCTCAGCAGGCCAGAAGGAGAAGGCCTCAGACGCGGCGGACGCGGCGGAG GTCGATTCGTCTCACACCGTTCAGGAGAGCCCGGCGGTGAACTCACCCAGCACTGTGTCT GAGAACGCGGTGGACAAACCTCCGCCGGCGATGAGCTTCAACTTCGAGCAGGAGGTGCAA GTGAACCAGAAGGAGATCATGGACATGTACATGAAGAGCATGCAGCAGTTCACGGAGTCG CTGGCCAAGATGAAGCTCCCGCTGGACCTGGACAATGGCAGCGACAAGAGCGGGAGCGGC CCCGCCGCCGCCTCGCCCACTGATTCCAGCGGCACCGACTCGAGCGCGGCGGCGAAGAAA CCGACGGCCGGGGGTGCGCAGGAGAAATCTCCCAAGGTGTTCTACGGAAGCCGAGCCTTC TTCTAA