- Transcript HORVU2Hr1G036050.3
- Transcript IDHORVU2Hr1G036050.3
- Gene IDHORVU2Hr1G036050
Barley RTD
Exon Structure of HORVU2Hr1G036050.3
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr2H | 1 | 157574796 | 157573846 | - |
| chr2H | 2 | 157578838 | 157578208 | - |
| chr2H | 3 | 157579440 | 157579225 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os07g39620.2 | +2 | 2e-63 | 216 | 171/259 (66%) | protein|C2 domain containing protein, putative, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g23257.3.p | +2 | 5e-79 | 257 | 204/257 (79%) | pacid=32801215 transcript=Bradi1g23257.3 locus=Bradi1g23257 ID=Bradi1g23257.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1798 bp)
>HORVU2Hr1G036050.3 1798 150831_barley_pseudomolecules AGAAAGGCCAAGGGCGGGCAGGGGGCTATAAAAAAATCTCGTGCTACTGCCCTAATTCCC TTTGGACTTTGGCGTTATATCCATCCTCGAGCCCCTCCCGACTCTCAGCCTCACCCTGCC CGCTGCTCTCTCCTCCGCGCCTGATTCCAGTGGTGCTGCTGCTTCTTCTCAAATCTCCAG GACAGACCAGACACACACACAGGGACACAGGGTAAGTTGCGGAGCAGCTAGCGGCGGAGG TGCTTTCTTCGTCATGGAGTCGCAGCAGCAGCAGCAGCAGATGGAGGCGGTTTCTGCGCC GGCCGCCGCTACGAACGGGGGCGGGGAGCTGATCGGGTACGTGGACGTGCACGTGCGGAG CGCGCGGGACATTCAGAACATCTGCATCTACCACAAGCAGGATGTGTACGCGCGCCTGTC GCTGCCGGGGGAGGGCGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNAATATGGAGTTCCCTGACATGAATCTTGTGGAGGAAAACCAGATTATGCTCTC GGAATATGTTGGTCTGCCGTGCACGGCCATGGAAACGCAGAGCTCCGAGAGCCTCCTGAC CTCAGAGGACGTGGATGGCGCCGCCACCGAGTCCCACGACGCCGGCGTGCGAGTTGTGCA GAGCTTCTCGACGGACTACAGCACCGCCGACTCCTCGGCCGGCGCCTTCCGGAGCGAGAC GGCAGTCAGCAGCGTGTCCACCACGGAGTCCCCGGCCGCGGCCGTCCCGGCTACCCCGCA GTCCAACCCGTCCGAGCCGTCAGGAAACGCCCTCTCCTCAGCAGGCCAGAAGGAGAAGGC CTCAGACGCGGCGGACGCGGCGGAGGTCGATTCGTCTCACACCGTTCAGGAGAGCCCGGC GGTGAACTCACCCAGCACTGTGTCTGAGAACGCGGTGGACAAACCTCCGCCGGCGATGAG CTTCAACTTCGAGCAGGAGGTGCAAGTGAACCAGAAGGAGATCATGGACATGTACATGAA GAGCATGCAGCAGTTCACGGAGTCGCTGGCCAAGATGAAGCTCCCGCTGGACCTGGACAA TGGCAGCGACAAGAGCGGGAGCGGCCCCGCCGCCGCCTCGCCCACTGATTCCAGCGGCAC CGACTCGAGCGCGGCGGCGAAGAAACCGACGGCCGGGGGTGCGCAGGAGAAATCTCCCAA GGTGTTCTACGGAAGCCGAGCCTTCTTCTAAGCCGAACGAGCCCGGACGCCGGACTAGAA GATGGCATTTGCAGTCATCAGTCTCAGCTGAAAATCTTGGTAGCGCAGAAGAATAACAAT TTTCTCATGCTGTTGTTTTATTTAGGCTTCGTCAGTCAGATCGCAAGACGCATTTGGAAA TTAGCTGCCCGGTCTTTCTTTTAATGTATCGCTCGCTACTCTAATGAGAAAATGTTTG