- Transcript HORVU1Hr1G019870.1
- Transcript IDHORVU1Hr1G019870.1
- Gene IDHORVU1Hr1G019870
Exon Structure of HORVU1Hr1G019870.1
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr1H | 1 | 75398759 | 75398304 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os11g41620.1 | +1 | 3e-49 | 169 | 83/148 (56%) | protein|transposon protein, putative, unclassified, expressed |
TAIR PP10 | None | - | - | - | - | - |
BRACH PP3 | None | - | - | - | - | - |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (456 bp)
>HORVU1Hr1G019870.1 456 150831_barley_pseudomolecules ATGCCCTTAAAGAAATTTGGTGCAAAAGTGCAGACGGAGTACAATATGCTTCCAACCAGA AGTAAGATAGGAAGGGCAAGAAGGGCAGCAGTGAAGCAGATTAGAGGTGAAGATGATGAC CAGTACAAACTTCTGTTGGATTTTGGCCAGGAACTTAGAAGATCTAACCCAGACAGCAAG TTCTATCTTTGCACAAAGGAAGTGAAGAAGGAGAAGCATCCATTCCCAAAAGAACACTTC TCTACTCTATACTGGTCCTATGATGCTTGCAAGAGAGGCTTCCTTATGGGTTGTAGGCAA ATAATCTTCGTTCATGGCTGCCACATAAAGACAAGGTACAAAGGGAATTTGCTAACTGCA GTTGGAATTGACCCAAATGACTGCATATTTTCTGTTGCTTTTGGTTTGGTGGAAGTTGAG TCAACTGATAGTTGGGATGGTTTCTGGCTAGTTTAA