Exon Structure of HORVU7Hr1G106780.5

ChromosomeExonStartStopDirection
chr7H1620784789620784700+
chr7H2620785405620785279+
chr7H3620786395620785866+
chr7H4620786624620786494+
chr7H5620787144620786727+
chr7H6620788394620787261+
chr7H7620788805620788653+
chr7H8620789631620788920+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os06g46240.1 +2 6e-178 319 171/239 (72%) protein|BTB/POZ domain containing protein, putative, expressed
TAIR PP10 AT1G04390 @ ARAPORT
AT1G04390.1 @ TAIR
+2 3e-69 249 143/360 (40%) Symbols: | BTB/POZ domain-containing protein | chr1:1179678-1183615 REVERSE LENGTH=849
BRACH PP3 Bradi1g32690.2.p +2 0.0 853 467/625 (75%) pacid=32804374 transcript=Bradi1g32690.2 locus=Bradi1g32690 ID=Bradi1g32690.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (3295 bp)

>HORVU7Hr1G106780.5 3295 150831_barley_pseudomolecules
CGGCGCCGGCGCCGGGGAGCATCTCCTCACCGACCGCGTCCTCTCCCTCCGCGCACGCCT
GCACGACGCCCTCTCCCTCGGCCTCGCCAGGTCTGATGGCCACGGTGCAAAAAAATGGCA
GTCTACTGATGCTGGAATTCAGTCTCACGCGATCAAAGCAGTGACTGCTTTTCTCGGTTG
TTTGTCAACTGAAATGCTGCGGCTTCCTCCTATAAAGGAGTCAATTTCGGATATTCTCGT
ACTCTTGGAAGGTGTTCTTCAGACAAAGAACGTTTCAGTTCTGATCCAAGCAGCAGATGT
GAGCTCAAAGTTAGTTTCCAGCATAGGCAATTCGATTCGGCAATACTCAATTTTGGAGAT
TGTTTCGCCCCTCTCATGCCAGTTGTCGGCACACCAGTTACCTACGGCTATCTCATGTGC
AAGGGCAATAAACTGCATATTGAATAGCCTAGTGACAGCGAGAGGTTCAACTCATGCAGA
AATTTTGGAAACCTTGGAGAGAACCAATGCAGTTGCTAGTATTGTTTCAGCTCTGCAGAG
TTACACTCTTGATGTCCATCCACTGAGTTATCTGACCGAGATGATATCACTGCTAAGAAC
CATACTGTGGACTTGGCCTTCCTCAAGATACCATGTATGGAGTAACGGCGACCTGATGGG
GAAGTTAGCACATTACTGTCTTGCCACTGAAACAACGGTTGTAGCTAAAGTTCTGAGGCT
GTATGCTGCTTTAGGTACATCTGTTTGCTTTATGTGGCCATGGAGCTACGATCCTTCTCA
AGAATGAAGTCTTAATGGCTAAGATTTGTGAGCTTGTGGGGACGTCCCATCCGACTAGTA
CTAGGATTGAAGCGTTCAAACTCTGCCATGTTCTTTTGAGATCTTCGAAGGGCTGTAGTC
AGTTAATGACTTCACGTTGCCAGCCTATTGTTGAAGGCATAATCGATGCAATGCGTGCAA
AGGATGATAAATTGTTAGTAACAGAGGGGTGTCGTACTGCACTGGTGGTCCTCCGTTATG
CTGGGAATCATCATCAATGCTTTTGGTCTAATGCCATTGATAAAGTATTATATACCATTC
TTACGGGCCGCTGCCTCTCCTCGCATCAAAGTGATCAAGTTTTGTGCGATGATGAGCTAT
TTGATATGGTTTCCAAAAACTTCATGGATATACATCCATACGTCTGGGATATACTTGGAT
ATCTAGTGGTGCATTGCACTGACAAGCACCATCCTGTAAGGAAAGGGAAAGGTCATAGCT
TGCACGCACTGATATCTTGTGCTTGGTAGGTACTAGCTTGCTGGCCACAGATGTTATGCG
CAAAAGCAGCCCCATGAAATTGTCCAAAGATGTGCAGGAGCCGGCTTTGAGAGCAGTTCT
GATGATGCTTCTCTCTCCCAATGGATATATTCAGTATGAGGCAAGTTTTAAACTTTCAGA
AGGTCTTCCGTATTTGGGTGATGGCTATTTGAACGTTCTATTGTCATCATTAGAATCAAA
TGCTACGAGAAGTGTTGCCACATCTTTTGACAGTTTCAAAATTATGACCAACCTCATGAA
CCTAGCATGTTTGGTGCTGTCACGACCTTACCATAATCTCCTGAACAAGAGGAATCCTAT
AGATGTGTTGTCCACCATTATCAAGGAATCTCTCCACAATCATATACATATTACGAGGTC
AAAAGTCACTTCCCATCTGCATTTTTGTTTTGATGGAAGTTCATGCTGTTGCTATCTCGG
TGAAGAGTGGGAGGGTGAAAACATAGTTTTATTCTACGGTCTTGTTGTGCTGTTTAATCT
TATGAGGAGCACTACTTTAGTTTGTGTTCAGTGTAAGAGGAAGTTGGATGTTGGAAATCT
GTGCCATGACTGCAGAGATCAATATACAGAAGATTTTCTTATAGTTCTTCAACATGCTCT
AAGTCAAAGCTTGAGTTCTGGACCGAAGCTCTATATTGCACACATCCTGAGTTTGTTTGG
CCTCTGTGGTTCTCCAAGCAAGTTGGGCGGGAAGATGACTAGTGCATTAGATAATAACGA
TCTAGCTGATCTGGAACTTTTGCTTTCAGATGGTGAATCTCTAAATGCTCACACAGCCAT
CATATCAGCGAGGTGTCCTAAGCTGTTGCCATCTGTAAAATATCTACTTGGCAGCGATGA
AAAAGTTAAAGATGAATGGGGAAAATCAGTGTACCGAGTTCAGATGTCTGATCGTGTAGA
TAGTCGCGCCTTGAAGAAGATTTTGGAGTACACATATACTGGTTTTCTGATGGTAGGCGA
TGACGTTGTTAAACCAGTAAGGACACTTGCGAAGTATTGTCACCTGAAACCATTGGCAGA
AATGCTTCAGAAAGAGCAACCCAGATGGAACTCCGATTATGCCAGATATGATCTTAGTGC
TGCACTTGGACCTGTTGAGCATTCATTCTCGGATATAATTTTGGAGGCTAGGTCAAATGA
GGAAATGAATTGTCACCATGGGTCGTGCCAATTGTCAACCCCGCACGTTCATAGCCATAA
AATCGTGCTGACCATGAGCTGCGATTACCTCCGGGCATTATTTCGATCCGGGATGCATGA
GAGCTTCTCCGACGTTATCAGGGTTCCGCTCGGGTGGCAAGCGCTGGACAAGCTGGCTCA
CTGGTTCTACTCGGGCGAGCTGCCGAAAGCCGCCGTCGACTGCCGATGGAACAACCTGGG
CAGCGACGAGCAGCGCGCCCACCTGAACGCCTACGCGGAGCTGTCGTCCCTGTCCGAGTT
CTGGTTCCTGGAGGGGGTGAAGGAGGAGAGCCTCGTCGCGGCGTCGTCCCTCCTGGAGTC
GAGCACGAGCGCCGCCGCGGTCGGGTTCGTCGCCTTCGCGGCCAGCCTGGGCCAGTGGGA
GATGGTGGACGCCGGCGTCCGGAGCGTGGCGCACCTGTACCCCCGGCTCCGGGACTCCGG
CGGGCTGGAGCGGCTCGACGACGAGCTGCTCAACATGCTGCGCACCGAGTACGTCCGCTA
CTCGCAGCACGGAGGCAGGCAGAGGTGACTGAATGATACGTACGTACATGGGGGACCTGA
ATGCGCGTCGCCGTGCGCTATGTAGATCCCCCCCCAGGGATTGCTGCCATGCTTTCTTCA
CAGAGAATAATGTGCAATGTAAGTAGTAGCATTATCGTCTGGGTTGCCAGAGCGGAGAGC
TGTTTGTTGCTCCTGCCTGCATGGCGCACATGGTCACGCGCAAAGGTGCAGGTATCGGAG
GACCGACCGGCCTGCTGACACGCACACGCCGCGCCGATCCATCGCCACGCGCATC