Exon Structure of HORVU7Hr1G106780.4

ChromosomeExonStartStopDirection
chr7H1620784789620784700+
chr7H2620785405620785279+
chr7H3620786395620785866+
chr7H4620786624620786494+
chr7H5620787133620786727+
chr7H6620788394620787261+
chr7H7620788805620788653+
chr7H8620789631620788920+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os06g46240.1 +3 0.0 346 173/276 (63%) protein|BTB/POZ domain containing protein, putative, expressed
TAIR PP10 AT1G04390 @ ARAPORT
AT1G04390.1 @ TAIR
+3 4e-69 249 145/362 (40%) Symbols: | BTB/POZ domain-containing protein | chr1:1179678-1183615 REVERSE LENGTH=849
BRACH PP3 Bradi1g32690.2.p +3 0.0 1136 593/755 (79%) pacid=32804374 transcript=Bradi1g32690.2 locus=Bradi1g32690 ID=Bradi1g32690.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (3284 bp)

>HORVU7Hr1G106780.4 3284 150831_barley_pseudomolecules
CGGCGCCGGCGCCGGGGAGCATCTCCTCACCGACCGCGTCCTCTCCCTCCGCGCACGCCT
GCACGACGCCCTCTCCCTCGGCCTCGCCAGGTCTGATGGCCACGGTGCAAAAAAATGGCA
GTCTACTGATGCTGGAATTCAGTCTCACGCGATCAAAGCAGTGACTGCTTTTCTCGGTTG
TTTGTCAACTGAAATGCTGCGGCTTCCTCCTATAAAGGAGTCAATTTCGGATATTCTCGT
ACTCTTGGAAGGTGTTCTTCAGACAAAGAACGTTTCAGTTCTGATCCAAGCAGCAGATGT
GAGCTCAAAGTTAGTTTCCAGCATAGGCAATTCGATTCGGCAATACTCAATTTTGGAGAT
TGTTTCGCCCCTCTCATGCCAGTTGTCGGCACACCAGTTACCTACGGCTATCTCATGTGC
AAGGGCAATAAACTGCATATTGAATAGCCTAGTGACAGCGAGAGGTTCAACTCATGCAGA
AATTTTGGAAACCTTGGAGAGAACCAATGCAGTTGCTAGTATTGTTTCAGCTCTGCAGAG
TTACACTCTTGATGTCCATCCACTGAGTTATCTGACCGAGATGATATCACTGCTAAGAAC
CATACTGTGGACTTGGCCTTCCTCAAGATACCATGTATGGAGTAACGGCGACCTGATGGG
GAAGTTAGCACATTACTGTCTTGCCACTGAAACAACGGTTGTAGCTAAAGTTCTGAGGCT
GTATGCTGCTTTAGGTACATCTGTTTGCTTTATGTGGCCATGGAGCTACGATCCTTCTCA
AGAATGAAGTCTTAATGGCTAAGATTTGTGAGCTTGTGGGGACGTCCCATCCGACTAGTA
CTAGGATTGAAGCGTTCAAACTCTGCCATGTTCTTTTGAGATCTTCGAAGGGCTGTAGTC
AGTTAATGACTTCACGTTGCCAGCCTATTGTTGAAGGCATAATCGATGCAATGCGTGCAA
AGGATGATAAATTGTTAGTAACAGAGGGGTGTCGTACTGCACTGGTGGTCCTCCGTTATG
CTGGGAATCATCATCAATGCTTTTGGTCTAATGCCATTGATAAAGTATTATATACCATTC
TTACGGGCCGCTGCCTCTCCTCGCATCAAAGTGATCAAGTTTTGTGCGATGATGAGCTAT
TTGATATGGTTTCCAAAAACTTCATGGATATACATCCATACGTCTGGGATATACTTGGAT
ATCTAGTGGTGCATTGCACTGACAAGCACCATCCTGTAAGGAAAGGGAAAGGTCATAGCT
TGCACGCACTGATATCTTGTGCTTGCTTGCTGGCCACAGATGTTATGCGCAAAAGCAGCC
CCATGAAATTGTCCAAAGATGTGCAGGAGCCGGCTTTGAGAGCAGTTCTGATGATGCTTC
TCTCTCCCAATGGATATATTCAGTATGAGGCAAGTTTTAAACTTTCAGAAGGTCTTCCGT
ATTTGGGTGATGGCTATTTGAACGTTCTATTGTCATCATTAGAATCAAATGCTACGAGAA
GTGTTGCCACATCTTTTGACAGTTTCAAAATTATGACCAACCTCATGAACCTAGCATGTT
TGGTGCTGTCACGACCTTACCATAATCTCCTGAACAAGAGGAATCCTATAGATGTGTTGT
CCACCATTATCAAGGAATCTCTCCACAATCATATACATATTACGAGGTCAAAAGTCACTT
CCCATCTGCATTTTTGTTTTGATGGAAGTTCATGCTGTTGCTATCTCGGTGAAGAGTGGG
AGGGTGAAAACATAGTTTTATTCTACGGTCTTGTTGTGCTGTTTAATCTTATGAGGAGCA
CTACTTTAGTTTGTGTTCAGTGTAAGAGGAAGTTGGATGTTGGAAATCTGTGCCATGACT
GCAGAGATCAATATACAGAAGATTTTCTTATAGTTCTTCAACATGCTCTAAGTCAAAGCT
TGAGTTCTGGACCGAAGCTCTATATTGCACACATCCTGAGTTTGTTTGGCCTCTGTGGTT
CTCCAAGCAAGTTGGGCGGGAAGATGACTAGTGCATTAGATAATAACGATCTAGCTGATC
TGGAACTTTTGCTTTCAGATGGTGAATCTCTAAATGCTCACACAGCCATCATATCAGCGA
GGTGTCCTAAGCTGTTGCCATCTGTAAAATATCTACTTGGCAGCGATGAAAAAGTTAAAG
ATGAATGGGGAAAATCAGTGTACCGAGTTCAGATGTCTGATCGTGTAGATAGTCGCGCCT
TGAAGAAGATTTTGGAGTACACATATACTGGTTTTCTGATGGTAGGCGATGACGTTGTTA
AACCAGTAAGGACACTTGCGAAGTATTGTCACCTGAAACCATTGGCAGAAATGCTTCAGA
AAGAGCAACCCAGATGGAACTCCGATTATGCCAGATATGATCTTAGTGCTGCACTTGGAC
CTGTTGAGCATTCATTCTCGGATATAATTTTGGAGGCTAGGTCAAATGAGGAAATGAATT
GTCACCATGGGTCGTGCCAATTGTCAACCCCGCACGTTCATAGCCATAAAATCGTGCTGA
CCATGAGCTGCGATTACCTCCGGGCATTATTTCGATCCGGGATGCATGAGAGCTTCTCCG
ACGTTATCAGGGTTCCGCTCGGGTGGCAAGCGCTGGACAAGCTGGCTCACTGGTTCTACT
CGGGCGAGCTGCCGAAAGCCGCCGTCGACTGCCGATGGAACAACCTGGGCAGCGACGAGC
AGCGCGCCCACCTGAACGCCTACGCGGAGCTGTCGTCCCTGTCCGAGTTCTGGTTCCTGG
AGGGGGTGAAGGAGGAGAGCCTCGTCGCGGCGTCGTCCCTCCTGGAGTCGAGCACGAGCG
CCGCCGCGGTCGGGTTCGTCGCCTTCGCGGCCAGCCTGGGCCAGTGGGAGATGGTGGACG
CCGGCGTCCGGAGCGTGGCGCACCTGTACCCCCGGCTCCGGGACTCCGGCGGGCTGGAGC
GGCTCGACGACGAGCTGCTCAACATGCTGCGCACCGAGTACGTCCGCTACTCGCAGCACG
GAGGCAGGCAGAGGTGACTGAATGATACGTACGTACATGGGGGACCTGAATGCGCGTCGC
CGTGCGCTATGTAGATCCCCCCCCAGGGATTGCTGCCATGCTTTCTTCACAGAGAATAAT
GTGCAATGTAAGTAGTAGCATTATCGTCTGGGTTGCCAGAGCGGAGAGCTGTTTGTTGCT
CCTGCCTGCATGGCGCACATGGTCACGCGCAAAGGTGCAGGTATCGGAGGACCGACCGGC
CTGCTGACACGCACACGCCGCGCCGATCCATCGCCACGCGCATC