Exon Structure of HORVU7Hr1G106780.13

ChromosomeExonStartStopDirection
chr7H1620785406620785318+
chr7H2620786382620785866+
chr7H3620786624620786494+
chr7H4620787144620786727+
chr7H5620788394620787261+
chr7H6620788805620788653+
chr7H7620789461620788920+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os06g46240.1 +3 3e-169 470 227/351 (65%) protein|BTB/POZ domain containing protein, putative, expressed
TAIR PP10 AT1G04390 @ ARAPORT
AT1G04390.1 @ TAIR
+2 1e-69 249 143/360 (40%) Symbols: | BTB/POZ domain-containing protein | chr1:1179678-1183615 REVERSE LENGTH=849
BRACH PP3 Bradi1g32690.2.p +2 0.0 853 467/625 (75%) pacid=32804374 transcript=Bradi1g32690.2 locus=Bradi1g32690 ID=Bradi1g32690.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2984 bp)

>HORVU7Hr1G106780.13 2984 150831_barley_pseudomolecules
TGCTGGAATTCAGTCTCACGCGATCAAAGCAGTGACTGCTTTTCTCGGTTGTTTGTCAAC
TGAAATGCTGCGGCTTCCTCCTATAAAGGGAGTCAATTTCGGATATTCTCGTACTCTTGG
AAGGTGTTCTTCAGACAAAGAACGTTTCAGTTCTGATCCAAGCAGCAGATGTGAGCTCAA
AGTTAGTTTCCAGCATAGGCAATTCGATTCGGCAATACTCAATTTTGGAGATTGTTTCGC
CCCTCTCATGCCAGTTGTCGGCACACCAGTTACCTACGGCTATCTCATGTGCAAGGGCAA
TAAACTGCATATTGAATAGCCTAGTGACAGCGAGAGGTTCAACTCATGCAGAAATTTTGG
AAACCTTGGAGAGAACCAATGCAGTTGCTAGTATTGTTTCAGCTCTGCAGAGTTACACTC
TTGATGTCCATCCACTGAGTTATCTGACCGAGATGATATCACTGCTAAGAACCATACTGT
GGACTTGGCCTTCCTCAAGATACCATGTATGGAGTAACGGCGACCTGATGGGGAAGTTAG
CACATTACTGTCTTGCCACTGAAACAACGGTTGTAGCTAAAGTTCTGAGGCTGTATGCTG
CTTTAGCTTTATGTGGCCATGGAGCTACGATCCTTCTCAAGAATGAAGTCTTAATGGCTA
AGATTTGTGAGCTTGTGGGGACGTCCCATCCGACTAGTACTAGGATTGAAGCGTTCAAAC
TCTGCCATGTTCTTTTGAGATCTTCGAAGGGCTGTAGTCAGTTAATGACTTCACGTTGCC
AGCCTATTGTTGAAGGCATAATCGATGCAATGCGTGCAAAGGATGATAAATTGTTAGTAA
CAGAGGGGTGTCGTACTGCACTGGTGGTCCTCCGTTATGCTGGGAATCATCATCAATGCT
TTTGGTCTAATGCCATTGATAAAGTATTATATACCATTCTTACGGGCCGCTGCCTCTCCT
CGCATCAAAGTGATCAAGTTTTGTGCGATGATGAGCTATTTGATATGGTTTCCAAAAACT
TCATGGATATACATCCATACGTCTGGGATATACTTGGATATCTAGTGGTGCATTGCACTG
ACAAGCACCATCCTGTAAGGAAAGGGAAAGGTCATAGCTTGCACGCACTGATATCTTGTG
CTTGGTAGGTACTAGCTTGCTGGCCACAGATGTTATGCGCAAAAGCAGCCCCATGAAATT
GTCCAAAGATGTGCAGGAGCCGGCTTTGAGAGCAGTTCTGATGATGCTTCTCTCTCCCAA
TGGATATATTCAGTATGAGGCAAGTTTTAAACTTTCAGAAGGTCTTCCGTATTTGGGTGA
TGGCTATTTGAACGTTCTATTGTCATCATTAGAATCAAATGCTACGAGAAGTGTTGCCAC
ATCTTTTGACAGTTTCAAAATTATGACCAACCTCATGAACCTAGCATGTTTGGTGCTGTC
ACGACCTTACCATAATCTCCTGAACAAGAGGAATCCTATAGATGTGTTGTCCACCATTAT
CAAGGAATCTCTCCACAATCATATACATATTACGAGGTCAAAAGTCACTTCCCATCTGCA
TTTTTGTTTTGATGGAAGTTCATGCTGTTGCTATCTCGGTGAAGAGTGGGAGGGTGAAAA
CATAGTTTTATTCTACGGTCTTGTTGTGCTGTTTAATCTTATGAGGAGCACTACTTTAGT
TTGTGTTCAGTGTAAGAGGAAGTTGGATGTTGGAAATCTGTGCCATGACTGCAGAGATCA
ATATACAGAAGATTTTCTTATAGTTCTTCAACATGCTCTAAGTCAAAGCTTGAGTTCTGG
ACCGAAGCTCTATATTGCACACATCCTGAGTTTGTTTGGCCTCTGTGGTTCTCCAAGCAA
GTTGGGCGGGAAGATGACTAGTGCATTAGATAATAACGATCTAGCTGATCTGGAACTTTT
GCTTTCAGATGGTGAATCTCTAAATGCTCACACAGCCATCATATCAGCGAGGTGTCCTAA
GCTGTTGCCATCTGTAAAATATCTACTTGGCAGCGATGAAAAAGTTAAAGATGAATGGGG
AAAATCAGTGTACCGAGTTCAGATGTCTGATCGTGTAGATAGTCGCGCCTTGAAGAAGAT
TTTGGAGTACACATATACTGGTTTTCTGATGGTAGGCGATGACGTTGTTAAACCAGTAAG
GACACTTGCGAAGTATTGTCACCTGAAACCATTGGCAGAAATGCTTCAGAAAGAGCAACC
CAGATGGAACTCCGATTATGCCAGATATGATCTTAGTGCTGCACTTGGACCTGTTGAGCA
TTCATTCTCGGATATAATTTTGGAGGCTAGGTCAAATGAGGAAATGAATTGTCACCATGG
GTCGTGCCAATTGTCAACCCCGCACGTTCATAGCCATAAAATCGTGCTGACCATGAGCTG
CGATTACCTCCGGGCATTATTTCGATCCGGGATGCATGAGAGCTTCTCCGACGTTATCAG
GGTTCCGCTCGGGTGGCAAGCGCTGGACAAGCTGGCTCACTGGTTCTACTCGGGCGAGCT
GCCGAAAGCCGCCGTCGACTGCCGATGGAACAACCTGGGCAGCGACGAGCAGCGCGCCCA
CCTGAACGCCTACGCGGAGCTGTCGTCCCTGTCCGAGTTCTGGTTCCTGGAGGGGGTGAA
GGAGGAGAGCCTCGTCGCGGCGTCGTCCCTCCTGGAGTCGAGCACGAGCGCCGCCGCGGT
CGGGTTCGTCGCCTTCGCGGCCAGCCTGGGCCAGTGGGAGATGGTGGACGCCGGCGTCCG
GAGCGTGGCGCACCTGTACCCCCGGCTCCGGGACTCCGGCGGGCTGGAGCGGCTCGACGA
CGAGCTGCTCAACATGCTGCGCACCGAGTACGTCCGCTACTCGCAGCACGGAGGCAGGCA
GAGGTGACTGAATGATACGTACGTACATGGGGGACCTGAATGCGCGTCGCCGTGCGCTAT
GTAGATCCCCCCCCAGGGATTGCTGCCATGCTTTCTTCACAGAG