Exon Structure of HORVU7Hr1G106780.12

ChromosomeExonStartStopDirection
chr7H1620785405620785278+
chr7H2620786395620785866+
chr7H3620786624620786494+
chr7H4620787144620786727+
chr7H5620788394620787261+
chr7H6620788805620788653+
chr7H7620788958620788920+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os06g46240.1 +3 5e-175 309 151/214 (71%) protein|BTB/POZ domain containing protein, putative, expressed
TAIR PP10 AT1G04390 @ ARAPORT
AT1G04390.1 @ TAIR
+3 1e-38 154 91/229 (40%) Symbols: | BTB/POZ domain-containing protein | chr1:1179678-1183615 REVERSE LENGTH=849
BRACH PP3 Bradi1g32690.2.p +3 0.0 694 379/492 (77%) pacid=32804374 transcript=Bradi1g32690.2 locus=Bradi1g32690 ID=Bradi1g32690.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2533 bp)

>HORVU7Hr1G106780.12 2533 150831_barley_pseudomolecules
GGTCTGATGGCCACGGTGCAAAAAAATGGCAGTCTACTGATGCTGGAATTCAGTCTCACG
CGATCAAAGCAGTGACTGCTTTTCTCGGTTGTTTGTCAACTGAAATGCTGCGGCTTCCTC
CTATAAAGGAGTCAATTTCGGATATTCTCGTACTCTTGGAAGGTGTTCTTCAGACAAAGA
ACGTTTCAGTTCTGATCCAAGCAGCAGATGTGAGCTCAAAGTTAGTTTCCAGCATAGGCA
ATTCGATTCGGCAATACTCAATTTTGGAGATTGTTTCGCCCCTCTCATGCCAGTTGTCGG
CACACCAGTTACCTACGGCTATCTCATGTGCAAGGGCAATAAACTGCATATTGAATAGCC
TAGTGACAGCGAGAGGTTCAACTCATGCAGAAATTTTGGAAACCTTGGAGAGAACCAATG
CAGTTGCTAGTATTGTTTCAGCTCTGCAGAGTTACACTCTTGATGTCCATCCACTGAGTT
ATCTGACCGAGATGATATCACTGCTAAGAACCATACTGTGGACTTGGCCTTCCTCAAGAT
ACCATGTATGGAGTAACGGCGACCTGATGGGGAAGTTAGCACATTACTGTCTTGCCACTG
AAACAACGGTTGTAGCTAAAGTTCTGAGGCTGTATGCTGCTTTAGGTACATCTGTTTGCT
TTATGTGGCCATGGAGCTACGATCCTTCTCAAGAATGAAGTCTTAATGGCTAAGATTTGT
GAGCTTGTGGGGACGTCCCATCCGACTAGTACTAGGATTGAAGCGTTCAAACTCTGCCAT
GTTCTTTTGAGATCTTCGAAGGGCTGTAGTCAGTTAATGACTTCACGTTGCCAGCCTATT
GTTGAAGGCATAATCGATGCAATGCGTGCAAAGGATGATAAATTGTTAGTAACAGAGGGG
TGTCGTACTGCACTGGTGGTCCTCCGTTATGCTGGGAATCATCATCAATGCTTTTGGTCT
AATGCCATTGATAAAGTATTATATACCATTCTTACGGGCCGCTGCCTCTCCTCGCATCAA
AGTGATCAAGTTTTGTGCGATGATGAGCTATTTGATATGGTTTCCAAAAACTTCATGGAT
ATACATCCATACGTCTGGGATATACTTGGATATCTAGTGGTGCATTGCACTGACAAGCAC
CATCCTGTAAGGAAAGGGAAAGGTCATAGCTTGCACGCACTGATATCTTGTGCTTGGTAG
GTACTAGCTTGCTGGCCACAGATGTTATGCGCAAAAGCAGCCCCATGAAATTGTCCAAAG
ATGTGCAGGAGCCGGCTTTGAGAGCAGTTCTGATGATGCTTCTCTCTCCCAATGGATATA
TTCAGTATGAGGCAAGTTTTAAACTTTCAGAAGGTCTTCCGTATTTGGGTGATGGCTATT
TGAACGTTCTATTGTCATCATTAGAATCAAATGCTACGAGAAGTGTTGCCACATCTTTTG
ACAGTTTCAAAATTATGACCAACCTCATGAACCTAGCATGTTTGGTGCTGTCACGACCTT
ACCATAATCTCCTGAACAAGAGGAATCCTATAGATGTGTTGTCCACCATTATCAAGGAAT
CTCTCCACAATCATATACATATTACGAGGTCAAAAGTCACTTCCCATCTGCATTTTTGTT
TTGATGGAAGTTCATGCTGTTGCTATCTCGGTGAAGAGTGGGAGGGTGAAAACATAGTTT
TATTCTACGGTCTTGTTGTGCTGTTTAATCTTATGAGGAGCACTACTTTAGTTTGTGTTC
AGTGTAAGAGGAAGTTGGATGTTGGAAATCTGTGCCATGACTGCAGAGATCAATATACAG
AAGATTTTCTTATAGTTCTTCAACATGCTCTAAGTCAAAGCTTGAGTTCTGGACCGAAGC
TCTATATTGCACACATCCTGAGTTTGTTTGGCCTCTGTGGTTCTCCAAGCAAGTTGGGCG
GGAAGATGACTAGTGCATTAGATAATAACGATCTAGCTGATCTGGAACTTTTGCTTTCAG
ATGGTGAATCTCTAAATGCTCACACAGCCATCATATCAGCGAGGTGTCCTAAGCTGTTGC
CATCTGTAAAATATCTACTTGGCAGCGATGAAAAAGTTAAAGATGAATGGGGAAAATCAG
TGTACCGAGTTCAGATGTCTGATCGTGTAGATAGTCGCGCCTTGAAGAAGATTTTGGAGT
ACACATATACTGGTTTTCTGATGGTAGGCGATGACGTTGTTAAACCAGTAAGGACACTTG
CGAAGTATTGTCACCTGAAACCATTGGCAGAAATGCTTCAGAAAGAGCAACCCAGATGGA
ACTCCGATTATGCCAGATATGATCTTAGTGCTGCACTTGGACCTGTTGAGCATTCATTCT
CGGATATAATTTTGGAGGCTAGGTCAAATGAGGAAATGAATTGTCACCATGGGTCGTGCC
AATTGTCAACCCCGCACGTTCATAGCCATAAAATCGTGCTGACCATGAGCTGCGATTACC
TCCGGGCATTATTTCGATCCGGGATGCATGAGAGCTTCTCCGACGTTATCAGGGTTCCGC
TCGGGTGGCAAGC