Exon Structure of HORVU7Hr1G106780.1

ChromosomeExonStartStopDirection
chr7H1620784538620784469+
chr7H2620784789620784696+
chr7H3620785405620785279+
chr7H4620786382620785866+
chr7H5620786624620786494+
chr7H6620787133620786727+
chr7H7620787542620787261+
chr7H8620788394620787777+
chr7H9620789350620788920+
chr7H10620789634620789542+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os06g46240.1 +1 0.0 1108 600/867 (69%) protein|BTB/POZ domain containing protein, putative, expressed
TAIR PP10 AT1G04390 @ ARAPORT
AT1G04390.1 @ TAIR
+1 2e-43 170 126/402 (31%) Symbols: | BTB/POZ domain-containing protein | chr1:1179678-1183615 REVERSE LENGTH=849
BRACH PP3 Bradi1g32690.2.p +1 0.0 775 398/513 (78%) pacid=32804374 transcript=Bradi1g32690.2 locus=Bradi1g32690 ID=Bradi1g32690.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2770 bp)

>HORVU7Hr1G106780.1 2770 150831_barley_pseudomolecules
TTCCGGAGACCTGACGCGATGCGCCCCGCGGCCGGGAAGGAGAAGGGCAGGAGGAAGGGC
GGCGGCGCCGGCGCCGGCGCCGGCGCCGGGGAGCATCTCCTCACCGACCGCGTCCTCTCC
CTCCGCGCACGCCTGCACGACGCCCTCTCCCTCGGCCTCGCCAGGTCTGATGGCCACGGT
GCAAAAAAATGGCAGTCTACTGATGCTGGAATTCAGTCTCACGCGATCAAAGCAGTGACT
GCTTTTCTCGGTTGTTTGTCAACTGAAATGCTGCGGCTTCCTCCTATAAAGGAGTCAATT
TCGGATATTCTCGTACTCTTGGAAGGTGTTCTTCAGACAAAGAACGTTTCAGTTCTGATC
CAAGCAGCAGATGTGAGCTCAAAGTTAGTTTCCAGCATAGGCAATTCGATTCGGCAATAC
TCAATTTTGGAGATTGTTTCGCCCCTCTCATGCCAGTTGTCGGCACACCAGTTACCTACG
GCTATCTCATGTGCAAGGGCAATAAACTGCATATTGAATAGCCTAGTGACAGCGAGAGGT
TCAACTCATGCAGAAATTTTGGAAACCTTGGAGAGAACCAATGCAGTTGCTAGTATTGTT
TCAGCTCTGCAGAGTTACACTCTTGATGTCCATCCACTGAGTTATCTGACCGAGATGATA
TCACTGCTAAGAACCATACTGTGGACTTGGCCTTCCTCAAGATACCATGTATGGAGTAAC
GGCGACCTGATGGGGAAGTTAGCACATTACTGTCTTGCCACTGAAACAACGGTTGTAGCT
AAAGTTCTGAGGCTGTATGCTGCTTTAGCTTTATGTGGCCATGGAGCTACGATCCTTCTC
AAGAATGAAGTCTTAATGGCTAAGATTTGTGAGCTTGTGGGGACGTCCCATCCGACTAGT
ACTAGGATTGAAGCGTTCAAACTCTGCCATGTTCTTTTGAGATCTTCGAAGGGCTGTAGT
CAGTTAATGACTTCACGTTGCCAGCCTATTGTTGAAGGCATAATCGATGCAATGCGTGCA
AAGGATGATAAATTGTTAGTAACAGAGGGGTGTCGTACTGCACTGGTGGTCCTCCGTTAT
GCTGGGAATCATCATCAATGCTTTTGGTCTAATGCCATTGATAAAGTATTATATACCATT
CTTACGGGCCGCTGCCTCTCCTCGCATCAAAGTGATCAAGTTTTGTGCGATGATGAGCTA
TTTGATATGGTTTCCAAAAACTTCATGGATATACATCCATACGTCTGGGATATACTTGGA
TATCTAGTGGTGCATTGCACTGACAAGCACCATCCTGTAAGGAAAGGGAAAGGTCATAGC
TTGCACGCACTGATATCTTGTGCTTGCTTGCTGGCCACAGATGTTATGCGCAAAAGCAGC
CCCATGAAATTGTCCAAAGATGTGCAGGAGCCGGCTTTGAGAGCAGTTCTGATGATGCTT
CTCTCTCCCAATGGATATATTCAGTATGAGGCAAGTTTTAAACTTTCAGAAGGTCTTCCG
TATTTGGGTGATGGCTATTTGAACGTTCTATTGTCATCATTAGAATCAAATGCTACGAGA
AGTGTTGCCACATCTTTTGACAGTTTCAAAATTATGACCAACCTCATGAACCTAGCATGT
TTGGTGCTTACTTTAGTTTGTGTTCAGTGTAAGAGGAAGTTGGATGTTGGAAATCTGTGC
CATGACTGCAGAGATCAATATACAGAAGATTTTCTTATAGTTCTTCAACATGCTCTAAGT
CAAAGCTTGAGTTCTGGACCGAAGCTCTATATTGCACACATCCTGAGTTTGTTTGGCCTC
TGTGGTTCTCCAAGCAAGTTGGGCGGGAAGATGACTAGTGCATTAGATAATAACGATCTA
GCTGATCTGGAACTTTTGCTTTCAGATGGTGAATCTCTAAATGCTCACACAGCCATCATA
TCAGCGAGGTGTCCTAAGCTGTTGCCATCTGTAAAATATCTACTTGGCAGCGATGAAAAA
GTTAAAGATGAATGGGGAAAATCAGTGTACCGAGTTCAGATGTCTGATCGTGTAGATAGT
CGCGCCTTGAAGAAGATTTTGGAGTACACATATACTGGTTTTCTGATGGTAGGCGATGAC
GTTGTTAAACCAGTAAGGACACTTGCGAAGTATTGTCACCTGAAACCATTGGCAGAAATG
CTTCAGAAAGAGCAACCCAGATGGAACTCCGATTATGCCAGATATGATCTTAGTGCTGCA
CTTGGACCTGTTGAGCATTCATTCTCCTTCTCCGACGTTATCAGGGTTCCGCTCGGGTGG
CAAGCGCTGGACAAGCTGGCTCACTGGTTCTACTCGGGCGAGCTGCCGAAAGCCGCCGTC
GACTGCCGATGGAACAACCTGGGCAGCGACGAGCAGCGCGCCCACCTGAACGCCTACGCG
GAGCTGTCGTCCCTGTCCGAGTTCTGGTTCCTGGAGGGGGTGAAGGAGGAGAGCCTCGTC
GCGGCGTCGTCCCTCCTGGAGTCGAGCACGAGCGCCGCCGCGGTCGGGTTCGTCGCCTTC
GCGGCCAGCCTGGGCCAGTGGGAGATGGTGGACGCCGGCGTCCGGAGCGTGGCGCACCTG
TACCCCCGGCTCCGGGACTCCGGCGGGCTGGAGCGGCTCGACGACGAGCTGCTCAACATG
CTGCGCACCGAGTACGTCCGCTACTCGCAGCACGGAGGCACATGGTCACGCGCAAAGGTG
CAGGTATCGGAGGACCGACCGGCCTGCTGACACGCACACGCCGCGCCGATCCATCGCCAC
GCGCATCACA