- Transcript BART1_0-u30905.001
- Transcript IDBART1_0-u30905.001
- Gene IDBART1_0-u30905
Barley RTD
Exon Structure of BART1_0-u30905.001
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr4H | 1 | 594121917 | 594121506 | . |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.325503 | 0.220538 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0.428036 | 0 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0 | 0.193848 |
| morex | ROO2 | 0 | 0.259372 | 0 |
| morex | NOD | 0.422146 | 0.382751 | 0.672286 |
| morex | RAC | 0 | 0 | 0.285733 |
| morex | INF1 | 1.44761 | 0.678693 | 1.37463 |
| morex | INF2 | 2.40583 | 1.78898 | 2.07576 |
| morex | CAR5 | 0.57499 | 0.766834 | 0.811619 |
| morex | CAR15 | 0 | 0.268414 | 0.327789 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | None | - | - | - | - | - |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | None | - | - | - | - | - |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (412 bp)
>BART1_0-u30905.001 412 150831_barley_pseudomolecules NNNNNCGGCGCGGGAGTGCACGGTGCCCTGCGCGCGGAGGAGGAGCGGCGGCGGCGGCCC CTCGCAGTGGCGCGCGACGGCGTCCCTCAGCAGCCGCAGCGCCTTGGACGGGTTTCCGCG CTGGAGGTACGCGAGGGCCTTGTCGCAGTCGGCGCGCACGGCGGCAATGCCACCGGCGAC GGCGACGGCGGCCGCGGGAGGAGGAGTAGGGTTTGGGCCGGGGGTGGGGTTCTTTCGGCC CATCGGAGGAGCGAGGCTTTCCCTTTTAAGAGACGGTGGAGTGGGATTTGGGCGGAGCAG TGGTGCGGGTGGAGGCTGCAGAGGCAGAGGAGGGAGGTAGTCACGGGCGGGTGGTAGGGA TAGACGCGGGCCACGGCCGGGCGCGCTTCCCCCTCGCCGTTTCCACCTTCAC
Protein Sequence (118 aa)
>BART1_0-u30905.001 118 150831_barley_pseudomolecules XXGAGVHGALRAEEERRRRPLAVARDGVPQQPQRLGRVSALEVREGLVAVGAHGGNATGD GDGGRGRRSRVWAGGGVLSAHRRSEAFPFKRRWSGIWAEQWCGWRLQRQRREVVTGGW