- Gene HORVU3Hr1G055650
- Gene IDHORVU3Hr1G055650
- Location chr3H: 413469358 - 413474723
Barley RTD
Matching BART genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| BART ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| BART1_0-u20988 | 92.6 | - | - | 5366 | -428 | Containing |
Transcripts from Gene HORVU3Hr1G055650
| Transcript | Length(bp) | Description |
|---|---|---|
| HORVU3Hr1G055650.1 | 2906 | gene=HORVU3Hr1G055650 CDS=661-2559 |
| HORVU3Hr1G055650.2 | 2909 | gene=HORVU3Hr1G055650 CDS=664-2562 |
| HORVU3Hr1G055650.3 | 2458 | gene=HORVU3Hr1G055650 CDS=348-2246 |
| HORVU3Hr1G055650.4 | 1878 | gene=HORVU3Hr1G055650 CDS=1-1878 |
| HORVU3Hr1G055650.5 | 1800 | gene=HORVU3Hr1G055650 CDS=1-1800 |
| HORVU3Hr1G055650.6 | 1234 | gene=HORVU3Hr1G055650 CDS=2-1234 |
| HORVU3Hr1G055650.7 | 619 | gene=HORVU3Hr1G055650 CDS=1-522 |
| HORVU3Hr1G055650.8 | 1129 | gene=HORVU3Hr1G055650 CDS=1-1128 |
| HORVU3Hr1G055650.9 | 1050 | gene=HORVU3Hr1G055650 CDS=110-1048 |
Exon Structure of HORVU3Hr1G055650
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g43372.1 | +1 | 0.0 | 823 | 489/648 (75%) | protein|expressed protein |
| TAIR PP10 | AT1G64140 @ ARAPORT AT1G64140.1 @ TAIR |
+1 | 9e-171 | 513 | 302/545 (55%) | Symbols: | BEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G64550.1); Has 3596 Blast hits to 2004 proteins in 150 species: Archae - 0; Bacteria - 54; Metazoa - 1597; Fungi - 38; Plants - 513; Viruses - 9; Other Eukaryotes - 1385 (source: NCBI BLink). | chr1:23804069-23806009 REVERSE LENGTH=646 |
| BRACH PP3 | Bradi2g43880.2.p | +1 | 0.0 | 982 | 543/635 (86%) | pacid=32778732 transcript=Bradi2g43880.2 locus=Bradi2g43880 ID=Bradi2g43880.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons