- Transcript HORVU3Hr1G055650.7
- Transcript IDHORVU3Hr1G055650.7
- Gene IDHORVU3Hr1G055650
Exon Structure of HORVU3Hr1G055650.7
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr3H | 1 | 413469893 | 413469762 | - |
chr3H | 2 | 413470520 | 413470034 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os01g43372.1 | +1 | 4e-93 | 286 | 143/163 (88%) | protein|expressed protein |
TAIR PP10 | AT5G64550 @ ARAPORT AT5G64550.1 @ TAIR |
+1 | 8e-81 | 253 | 125/154 (81%) | Symbols: | loricrin-related | chr5:25801794-25803698 REVERSE LENGTH=634 |
BRACH PP3 | Bradi2g43880.2.p | +1 | 4e-104 | 313 | 155/165 (94%) | pacid=32778732 transcript=Bradi2g43880.2 locus=Bradi2g43880 ID=Bradi2g43880.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (619 bp)
>HORVU3Hr1G055650.7 619 150831_barley_pseudomolecules GAGAAGTGCACCAAGAGCGCAGAAGGTCATTCTGGCCTCTGCATCTCTCATGGGGGTGGG AGGCGCTGCCAGTTTCCAGAATGTGCAAAGGGTGCACAGGGAAGCACAAAGTTCTGCAAG GCACATGGTGGAGGCAAGCGCTGCACTTTCTTGGGCTGTACCAAAGGAGCTGAAGGCAGC ACCCCTTACTGCAAGGGCCATGGAGGAGGCAAGCGCTGCTTATTTGAGGGTGGTGGAGTG TGCCCCAAGAGCGTGCATGGCGGGACGCAGTACTGTGTTGCGCACGGTGGTGGCAAGAGG TGCGCTATTTCTGATTGCACCAAGAGTGCTAGAGGGCGGACGGAGTACTGCGTGCGCCAT GGTGGTGGCAAGAGATGCAGGTTCGACGGCTGTGTGAAGAGTGCACAGGGGAGCACTGAT TTCTGCAAGGCGCATGGGGGAGGCAAACGCTGCTCATGGGGCCTGCCGGGCTCAAGCTTC GGTATTGGGCGAGATGGAAGTTGCTGCAGCAGTGAAGGTTGATCCTGTTTCGATGCAGTC GGGGTCTCCATTGCCGGAGCCGGAGGGCAGGGTGCATGGTGGTGGGCTGCTGGCGCTGCT TTCTCGCGGCGGCAACCAC