Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u09734	97.0	-	-	1084	4735	Partial-Overlap
BART1_0-u09733	80.2	.	-	975	4636	Partial-Overlap

Transcripts from Gene HORVU2Hr1G036050

Transcript	Length(bp)	Description
HORVU2Hr1G036050.1	1751	gene=HORVU2Hr1G036050 CDS=2-1534
HORVU2Hr1G036050.2	1613	gene=HORVU2Hr1G036050 CDS=1-1404
HORVU2Hr1G036050.3	1798	gene=HORVU2Hr1G036050 CDS=254-1591
HORVU2Hr1G036050.4	1290	gene=HORVU2Hr1G036050 CDS=1-1290
HORVU2Hr1G036050.5	1326	gene=HORVU2Hr1G036050 CDS=1-1326
HORVU2Hr1G036050.6	338	gene=HORVU2Hr1G036050 CDS=2-337
HORVU2Hr1G036050.7	683	gene=HORVU2Hr1G036050 CDS=497-682
HORVU2Hr1G036050.8	573	gene=HORVU2Hr1G036050 CDS=389-571

Exon Structure of HORVU2Hr1G036050

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os07g39620.2	+2	2e-63	216	171/259 (66%)	protein|C2 domain containing protein, putative, expressed
TAIR PP10	None	-	-	-	-	-
BRACH PP3	Bradi1g23257.3.p	+2	5e-79	257	204/257 (79%)	pacid=32801215 transcript=Bradi1g23257.3 locus=Bradi1g23257 ID=Bradi1g23257.3.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons