Microarray Probes on PGSC0003DMT400090397
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_34368_PI426222305 |
JHI_St_60k_v1 |
ATCTCACATAGTTGAAGAGTATTTCCAAAGGACATTGGGTGAAAGTTTCAACAATCTCGG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400090397
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400090397 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT4G25420.1 |
+1 |
6e-171 |
486 |
234/351 (67%) |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:12990982-12992409 REVERSE LENGTH=377 |
Transcript Sequence (1122 bp)
>PGSC0003DMT400090397 1122 pgsc_dm_v3.4
ATGACCAATAATAGTATAATCACATATGAAAAATCACTTATGCTTGGTGAGGAAAAACCA
TTGATTTTTGATGCATCCCATATGAAGAATGAGTCCAACATTCCCACACAATATATATGG
CCAGATGACGAGAAGCCATGTGTTGTAGCACAAGAACTTCATGTTCCCCTTATTGACTTA
AGGGGTTTCTTTTCTGGTGACCCTGTCGCGACCCAACAAGCATCTAGGCTTGTTGGTGAA
GCGTGTAGGAGTCATGGTTTCTTTCTTGTAGTGAACCACAGAGTTGATTCTAATCTCATC
TCCAAAGCCCATCGTTACATGGACACGTTCTTTGACATGCCTCTCTCTGAAAAGCAAAAA
GCTCAGAGGAAAATTGGTGAGCATTGTGGCTATGCTAGCAGCTTTACTGGAAGGTTTTCT
TCAAAGCTGCCTTGGAAAGAGACACTCTCTTTACGATACACTGCTAAAGAAAACTCATCT
CACATAGTTGAAGAGTATTTCCAAAGGACATTGGGTGAAAGTTTCAACAATCTCGGGAAT
GTTTATCAAGAGTATTGCAATTCCATGAATACACTTTCTCTTAGGATCATGGAACTCTTA
GGGATTAGCCTAGGTGTACAGAAGAGCCACTTTAAAGAGTTTTTTGAAGACAATGAATCC
ATAATGAGACTCAACTACTATCCCCCGTGCTTGAAACCAGAGCTCACCTTAGGAACAGGA
CCTCACTATGATCCAACATCATTAACCGTTCTCCATCAGGATTGTGTTAGCGGACTTCAG
GTTTTTGTGGACAACGAATGGTACTCCATCTGTCCAAATTTCAATGCTTTTGTGGTTAAC
ATAGGCGACACATTTATGGCACTATCGAATGGTAGATACAAAAGTTGCTTGCATAGAGCA
GTTGTTAACAACACGACTCCTAGAAAATCACTAGCTTTCTTTCTTTGTCCAGACAAAGAT
AAGGTGGTGAGTCCACCAACTAAATTGGTGGACTACAACAACCCTCGACTATATCCTGAC
TTCACATGGCCTGCTCTCCTTGAGTTTACTCAAAAGCATCATAGAGCTGAGACAAACACT
CTTCAAGCTTTCTCGATGTGGCTTCAAGAAAATAATATATAA
