Microarray Probes on PGSC0003DMT400087226
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_2123_PI426222305 |
JHI_St_60k_v1 |
ACCGTAAGAAGTCCTATAGTAGTAGCTCCAGCTCCTGATGCCCCCAATGAAAATGATTGA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400087226
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400087226 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc10g084320.1 |
+1 |
0.0 |
1044 |
520/567 (92%) |
evidence_code:10F1H1E1IEG genomic_reference:SL2.50ch10 gene_region:63240593-63242908 transcript_region:SL2.50ch10:63240593..63242908+ go_terms:GO:0006508,GO:0043086 functional_description:Subtilisin-like protease (AHRD V1 **-- O82777_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related |
| TAIR PP10 |
AT5G51750.1 |
+1 |
6e-124 |
386 |
228/571 (40%) |
subtilase 1.3 | chr5:21020266-21022608 FORWARD LENGTH=780 |
Transcript Sequence (1701 bp)
>PGSC0003DMT400087226 1701 pgsc_dm_v3.4
ATGAATTCTGCAAGGGATATGAGAGATCATGGCACTCATGTTGCTTCCATTGCTGCTGGT
AGTCCTGTTAAAGGAGTTTCATATTTTGGATATGCTCCTGGAACAGCAAGAGGTATTGCG
CCACGAGCTAGGATTGCTGTGTATAAGTTTAGCTTTGAAGAAGAGACCGTCACTTCTGAT
TTAATTGCTGCTATGGACCAAGCTGTTGCAGATGGCGTTGACGTACTATCACTTTCTTAT
GGGTATGGTTTTGATCCGTTGTATGAAGATTCTGTTGCAATAGCTTCTTTTGGTGCCATG
ATGAAGGGTGTGTTAGTCTCTGCTTCAGCTGGGAATAATGGTCCTGAAATGGGAACTTTA
TCCAATGGATTCCCCTGGATCTTTACTGTGGCATCAGGCAGAACTGACCGATCATTTTCC
AGGACAATAACTTTTGGGAATGGCTTAAAGATTACTGGATTTAGCTTGTTTCCAGTGAGA
ACCACCATCAAGGATTTTGATTTGGTTTTCAATGGAAGCTTATCCACTTGTAATGACCCT
GATGGTTTAGCCCAAGTCCCTAATAAAGAACGTAGCATCACGATTTGTTATAGCGGTGCA
CAAGAAGACTTATCAGTCTCTGACCAAATGGGGTTTATCTCAGAGGCAAAATTTGGAGGC
GCACTCTATGTTTATGAAGATCCGGATGTATTGGCATCCAATTTTTTTCCCAATCCTGGA
GCTGTAATTAGCAGCAAGGATTGGAAAAAGGTGGTAGACTATGCAAAAACAAGTGCTAAA
CCAAAAGTCAGCATCAGTTTCCAGGAAACACATTTTGCTGTTAAGCCTGCTCCAGTTGTT
TCTGCATTTTCCTCGAGAGGCCCCTCCCTAAGCTATCTACGAGTTGCAAAGCCAGATATT
ATGGCACCAGGGGAGTTAATTTTAGCAGCCTGGCCATCGAACACTTCAGCTGCAGTTATT
GGTGTCAATACATTTTTGGATAGTGATTACAGGCTTCTTTCAGGCACTTCGATGGCTGCT
CCTCACATTTCCGGAATTGCTGCAATGCTAAAAGGAGTACATCCTGATTGGAGTCCTTCA
GCTATTCGATCTGCCATGATGACCACTGCAAATCCTTTGGATAATACTGAAAAACCCATC
AAGACCATGGATTACCTCAGAACCAGTTATGCTATATCTTTATCCATGGGAGCCGGACTT
GTTGATCCAAACCGTGCAGTTGATCCAGGCCTGATATATGATGCAACTCCACAAGACTAC
GTGAATCTTCTCTGCTCCATGAATTTCACAGAAAAGCAGTTCAAGACAATTGCTAGATCA
TCAGCTAAGCACAACTGTGCAAATCCATCAGATGATATCAATTACCCATCATTTATTGCT
CTCTACATCCCAAAAGGGGACTACGCTTGGTTGGATCAGAAATTCAGGAGGACAGTCACA
AATGTTGGACCTGGTGCAGCTAAGTACAAAGTAAAAGTGAAAGCACCAATAAACTCAACA
ATTTCTATCTCTCCACAGACCTTGGTGTTTGAGAAAAAACATCAGAAGCAGGACTACACT
CTTACCATACGTTACAGAGGCATTGAATTTGACCAAGCACAATCTGGTTCAATCACTTGG
GTGGAAAAGAACGGTCATCACACCGTAAGAAGTCCTATAGTAGTAGCTCCAGCTCCTGAT
GCCCCCAATGAAAATGATTGA
