Microarray Probes on PGSC0003DMT400081438
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_38024_PI426222305 |
JHI_St_60k_v1 |
GATATTTGGGAATAGGTGAGTTGTGAGACATCAGATTGTAGATTTTGAACTTCACAATAC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400081438
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400081438 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G62890.1 |
+2 |
4e-170 |
504 |
247/442 (56%) |
Pentatricopeptide repeat (PPR) superfamily protein | chr3:23246168-23247973 FORWARD LENGTH=573 |
Transcript Sequence (2193 bp)
>PGSC0003DMT400081438 2193 pgsc_dm_v3.4
CCGGAAGCTAAACTTTGTGCTTTGAGCATTGAAACCACTGCTTAACATCCAAATGAAGAT
ATCAACCAGAAAGCTCATATCTTTAACGCACCCTTCTCTCAATCTTTGGCATCCAACTGT
CGATTGTTTCACTTGGAATACTCTCATCAGAGCCTATGTTCAACGAACTCATCAACCTTC
AAGCCCCATCCATACCCCACTCTCCATCTTCCTCCGAATGCGCTTCCATGGCGTCCATAT
TGATTACTACACCTTCCCTTTTCTCCTCCAGTCAGTCCATTCTCCACCACACCTCCAATT
GGGACGATCCATTCACTCACAGGTTCTTGTTTTTGGTTTTTCATCCGACCCGTTTGTCCA
AACTTCGTTGATCAGTATGTACACTGCTTGTGGCGATGTGGGGTCTGCACGAGATGTGTT
TGATGAAATGTCTCAACCGGATTTGCCTGCGTGGAATTCTATTGTTAATGCGAACGTGAA
AGCGGGTTTGCTTAGTGTTGCGCGTGAACTGTTTGTTAAAATGCCAAGCAGAAATGTTGT
ATCTTGGAGTAGTATGTTGGATGGTTATGTGAGGTGGGGTAAGTGTGAAGAAGCATTGGA
GTTGTTTAATGAGATGATAAAAGAAAATGAGGTTATGCCTAATGAGTATACCATGGCTAT
TTTGCTTGCGGCGTGTGAGCAGTTGGGTTCACTTGAACATGGGAAATGGGCTCATGCTTG
TGTTTACAAACTCGGGATGGAGATTAATGTTGTTCTTGGGACTTCGTTGATTGAAATGTA
CGCTAAATGTGGGAGTATAGTCCGGGCAAGATTAGTTTTTGAAAATTTGGGTCCAAAGAA
GGATGTAATGGCTTGGAGTGCCATGATCTCAGGTCTTGCTATGCATGGACACTGGGAAGA
TTGTCTCTGTTTGTTTTCAAATATGGTTGACAGCGGAGTAATGCCTGATGATATCACGTT
CTTAGGTGTTCTTTCTGCTTGTGTACATGGAGGATTGGTGAGCCAAGGGAAGGAAATGTT
TGAGAGGATGAGTAAAGAGTTTGGTATTTCGCCTTCAGTTCAGCATTATGGTTGTATGAT
TGACCTTTATGGCAAGGCTGGTTTGATTGATGAAGCGTGGAATCTTCTGAATACAATGCC
TATGGAGCCAGATGTGCTTATTTGGGGAGCTCTTCTTAGTGGAGCCAGGATATGTGGAGA
TATTGAAACATGTGAGATTGCACTCAACAAAATAATAGAGCAAGATCCCACAAATAGTGC
AGCTTATGTTCTTCTCTCCAATGTCTACGCTAAGATGGGTCGGTGGAAAGATGCTAGGGA
CATCAGAAACGTTATGGAGACAAATAAGGTACAGAAAGTTCCTGGGCGTAGTTCCATAGA
GGTCAATTCAAATATCCAGTAGAACTAGTTTACGTTGAAATGAGTATCAGGCAGGCACTA
GTAAATCATGTGATGCTCAAGGATACTCTGCGCGGGTTCAAGATGGACGGTTTTATGCAG
ACATTACACAAGGTACTGCTAAATTTGAATGAGGAATGAAAGAATTTAGCAGTTTTCACT
TCATTATAAGAACATGGCAATTTGAATTCTCCGTGCTAATACTGTAACATGGTTTGGATA
TGCCCAGTAAAAACGTCAGGCATGCACCGTGCAGGTGGTGGTAATGTTGCAGTATAAATT
ACCTCAAGGACTGCTTGTGGAGTTGTGGTCGAGATTGTTGTGACACATCGGAAGAATCTT
CTTGTAGTGAGTGGTGGTAACTGACCTTGTCACTGAATTTTGATTGGGAATCTCTTCCTT
TTAGGCTCAGAAGCTTACAAACTCATCTGACCTGGTAATATCAAAGTCCCCTCCCAGCGG
AATTAAGATTCATTTGTTTTGCTTGGTAATATCGAATCTTGAAATAGCTAATTTGTTTAT
TGTAGTATTATGAATCAATGAATATGTGCTCCAATTCGTTTCACAACAAAAGGAAGAAGC
TAGTTGCGGAAGCAACTTGTAAGTCAAGTTTGCAAAAGTAGAGCCGAGACACCATGATTT
GCCTACCAAAAAAGAGACTCCTCATACATCATCCATCAATCACTTGGTGGTTGCTAAATT
TCTAGTTTGTGTTTGGTGAACATGTCATTTGATATTTGGGAATAGGTGAGTTGTGAGACA
TCAGATTGTAGATTTTGAACTTCACAATACTTT
