Microarray Probes on PGSC0003DMT400079820
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_40894_PI426222305 |
JHI_St_60k_v1 |
GATTGGATCATTTCGGAGCAGCCTGTAATGCTTGAGGATCTTCACCATGCCATTTCAAAG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400079820
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400079820 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G10420.2 |
+2 |
2e-180 |
548 |
301/423 (71%) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:3239307-3242274 FORWARD LENGTH=684 |
Transcript Sequence (3440 bp)
>PGSC0003DMT400079820 3440 pgsc_dm_v3.4
CGAAAACAAAGCCACCCACGTGGTTCCTTCTCCATGGTCATTGTAATGGTTTTCTTCTTC
CTAATGGACCCTACTTGCCCTCCGTTGTAGGAGATCCTTTCGAATCTTCTTCTCTTTCTT
CTCCTCATCATCTATTTCTCTTCACATTTCAGCAAAAACTATTAACACAACATCTTGTAC
AGTTCAAAAAAGAAGAAAAACAGTGTATAGAAAGTGGGTTTTTTTGTGAGCTGAGGTGAA
GAGATACAGAATGAGTGCTTTGTATTCCACTTTTATCTTGATTGATCTTCAAAGTTCTTG
GTATTCAGCTAAACAGATACCCAATTCCACTTTTTGTTATTTAAACCAGTCTCAATTTCC
TTCTTCCACGTTCTCAGCGGCATTTCGTCGAACACGTGGTGGGCGGGGTAGATTTCCGGC
GGTTTCAGCGTCGATTCAGTCACCGGGAATCAGGAGACCGAGGGAACGTTCCGGTGCCGG
AAATGGGTTGTCGTTGTTTTCTCCTAATTCGCCTTCCACTTCGTGTTCCGGGGATGAGGT
TGTGTCGGATTTGGACTTGTTCTTGGAGTTAGTGCCACTGAGGATGAGGAATGAGCTATT
TATGCATCAGGAGATTGGGAAGTTGGTTGAGGTAGTTATGGATTTAGGTAGAAAGCCCCT
CGCGCGATTTCCTTCAGGTGATTGGATCATTTCGGAGCAGCCTGTAATGCTTGAGGATCT
TCACCATGCCATTTCAAAGGTGGGGGATTTCTCAGATGACAACCGTTCTGGTATTGACAG
TTCCCTACATCGTATTAGTGCAATTAGAAACCGTAAAATGCAAATTATTGGCCTTACCTG
CCGGGTTGGTCGAGCTGTATCTGGAAGTGCTGAGATCATACGTGACTTGATTGAAGGAGG
TGGCTCCATATTGGTGATAGGTCCTCCAGGGGTTGGTAAAACTACCTTAATCAGAGAAAT
AGCCAGGATGCTGGCAGATGGCCAGAAGAAACGAGTCGTTATTGTTGATACATCTAATGA
GATCGGAGGCGATGGAGATGTTCCTCATTCAGGTATTGGCTGTGCAAGAAGGATGCAAGT
CCCAAATGTTAACCTGCAGCATAATGTAATGATCGAAGCAGTTGAAAACCATATGCCCCA
AACCATCATCATAGATGAAATAGGTACAGAGCTTGAAGCATTGGCTGCTAGTACAATTGC
TCAGAGAGGAGTACAGCTTGTTGGAACTGCTCATGGAAGTACTATTGAGAGTATAGTAAA
AAATCCATCCTTACAGATGCTTGTTGGTGGCATAGAGAGTGTTACTCTTGGTGATGAGGA
AGCAAGGAAAAGGAAAGTACAGAAAACAATTCTCGAGAGGAAAGGTCCTCCAACCTTCAC
ATGTGCTGTTGAGATGATATCAAGAACTCAATGCCGTGTTCACCATAGACTAGATTTGAC
AGTAGATGCTTTATTAGCAGGAAAATCTCCTTTGTTTGAGATACGGGGATTGGAGAGTGA
AGCCGAAAATTTGATCGAGTCTTCTCCATTCACTCTAGAGGACGATGTTAATGACTTTGA
GCTAATTGATAAAGTGGAAAAGAAAGACAAAATGGAGTCTGATAGGGAATATGTAAAAAA
GAAACCTAAAGTGGAGTCTGATATGGAGTATGTAAAAAAGAAAGATAAAGTGGAGTTTGA
TATGGAGTATGTAAAAAAGAAAGTTAAAGTAGAGTCTGATAGGGAGTATGTAAAAAAGAA
AGATAAAGAAGAGTATGTAAGTTATAGCATGCAATCCAGTAACGAAGACAAAAAGATAAA
ATTTGAGTCAGACGAGGAAGACGATGATCATCCCAATTCCAAGAAATCGGGCACCAGTGG
ATATGCCAGCAAAAGGACCTCTCCTGTGTATGTTTATACTTATAAGATTCAAGAAGCTGA
TCTATTGCAAGTTGCAACTGTTATGGGGCTAGAGGAAGAAATTGAAGTAACAGATGATAT
TGGTATTGCAGATGCTATTCTAGCATCTAGTGCTGAAATGAAGCAGAATCCTTGGATTCG
TAGCGTTGCCAAATTTCATCAAGTGCCTGTCTTTGTTGTAAAGTCAAATACCATGGCACA
GATGGTGAAGGCTATCCGTATGATTCTTGGAATGGATTCTATTCACTCAAAACAACCATT
GAAAGATTCATCTGATATTGAAATTGAAGATGATGCACCGAAAAGGAGACCTACATTGGA
GGAGATCGATGCCTTAGAGGAGGTCCGCCTTGCAATTGAGTACATCGTCATACCTGGTGG
TGAGGCTGTTGAACTTCTCCCAAGGCGCTCTGAGATAGTTGCCCAACAACTCAAGCTGGT
TGAGAGTTATCAGTTGGCTGCAGAAAATTCAGGTACCGAATCAAACCCGAGACTGCAAAT
CCTTCCACAGAAACTGTACAGGAAGACTTCTGTAAAGACCTTGAGATCCAGTTCAAGTCA
GAACAGCACAGGTTCCGACTCATGGATTGGTAAGAACGGAGGCACTGGTGTTGCTCGACT
GCCTTTCTTGCCTGAATAATCAGATAAGTTCCTTTACCGCCTTTTCAACCTTGGTTGAAC
ATGTTAAAGGAAATGTACAGTGATGTATATCTGTATCTAAACCCCTGTAGATTCCATTGT
TTGGTGTAATTCTTTTCGTCGCAGTGTTGTCTGCTCATGTATTCCTTGCTAAAAGCACTT
TCAATACACTGTACAGTGATGTAAATCCTCCAAAGGAATGAAATTTAGTAACACTCATTC
CATAGAAATAAAACAACATTTGAAGCAAAATATAGGAGTCCCATTCTACTATATTGTCCA
TTGAAGTATGTGTGCTTGTATCTTCTATCATGTTATGAAAATGGACCTTGAGCCGCTCAT
GAGGTGAGAATTGTTCATGATTATACAAAAGAGACTGTAACTCGAACCCTCAACCAACGT
GGAACTTTAACACTCTTCCATTCCAAAATCTATGGTCCATTTTACTGTGATGGTGAAGCT
GATGATATTTCAGCAGCTTGTAATTCCTTCTCTGGAAACTCTCATGTATTGTATTTGATG
AATTTGTGCATTAGTAAGATTACTATTCTCTTCGATTTGTTCAATAAATTCAGCTAATGT
GTATACCTTTTAGTATAAATATGTGGAAATAGTCGAGGTGTGTATAACTTAGTTAGAGCA
TCACCACTAGTCCATCATACTCATGTGTATTCCCACAAGTGGAGACTGACTGATAGATAG
ACCTTACCTCTGCCTCGTAGAGATAGCGAAGTTATTTTCGAAAGACTCTTGGTTCAAGTA
ACACATCATAAAGCAATAAAAGACAAACTTGTATCTATACAATATCAATAAGGTGGTGGA
ATGTGTATAACAATGCAAAGAGTCTCCAACTTTATCTTTCAATAATACATAGATATTTGC
ATATGACTATTATAGAAAAG
