Microarray Probes on PGSC0003DMT400078815
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_33623_PI426222305 |
JHI_St_60k_v1 |
TATCGACCGTTCATCTTGGTTGATGTGTTTTAGCAATCAGCTAACTAAGATTTAATACGT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400078815
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Source Transcript PGSC0003DMT400078815 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT2G01300.1 |
+3 |
1e-31 |
114 |
52/116 (45%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15010.1); Has 73 Blast hits to 73 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:151221-151691 REVERSE LENGTH=156 |
Transcript Sequence (563 bp)
>PGSC0003DMT400078815 563 pgsc_dm_v3.4
CAGCCATGGAAAAAGTACTCTTAATTCCATCTAATTTTTCTTTCTCCAATCCCAAGAAAT
TTCTTATTCCCCGGAGAAGATCAAAGGGTAAAATTTCTTCTCATCGTAATGATTCTTGTG
ATTGGGATTATAGAGGGAGATTAGTGGATAAAAGTATGATTATATTAAGGAAGAGAGTTC
ATGAAATGAAGGTAATTGAAAGAAATTATGAGCCACCAGTAGAATGGATGGAATGGGAGA
AACAGTATTACGCTAATTATGATGAGTTAATTTGTAATTTAGTAGGGTATTTACAAATAC
AATTGTTAAGTACAAGGCCTAGTTTGGCTCTAGGTATGTTAATCCTCTTCATCATTAGTG
TGCCAGCTTCAACGGCCATGATTTTCATCAATTTGACAAGTGGCATCTTATCGACCGTTC
ATCTTGGTTGATGTGTTTTAGCAATCAGCTAACTAAGATTTAATACGTATTTTATGGACA
TATTGTAGATTGGTAATTGTATTTTGTATTTGCAAAATGAATCCCATATATACAAATGTA
ACACCGAGTAACTAAAATTTGTC
