Microarray Probes on PGSC0003DMT400078020
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_22582_PI426222305 |
JHI_St_60k_v1 |
TGTTCATGTGGGCGTTCTCCTCGCTGCTAATGGCAGAGAGTATGTTCTTGGAAGAATATA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400078020
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400078020 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G07350.1 |
+3 |
2e-31 |
127 |
60/80 (75%) |
RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:2257732-2260101 REVERSE LENGTH=382 |
Transcript Sequence (2115 bp)
>PGSC0003DMT400078020 2115 pgsc_dm_v3.4
CGCAACCCATTCGAGAGCCTTCGCTAATTAGAGAGAGAAAGAGACGCATTTCGATACTAC
GCCATAATCTCTTCACGATGTCGTATTCCAGGAGGTCAAGGTATACTCGTTCACCTTCAT
ACGATCGATATAGCAAGTCTGTCTCGAGGTCCAGATATGTTTCAAGGAGTCGGTCAAGGA
GCTGTGATTCAAGTGATGTTGAGAACCCAGGGAACAATTTGTATGTGACTGGTCTCTCAA
CCCGCGTTAAAGAGCGAGATGTTGAGAAGCATTTTTCTGCTGAGGGAAAGGTTGAAGATG
TTCGTCTTGTTTTTGACCCATGGACCCGCGAATCTCGTGGGTTTGGTTTCGTGACGATGT
CCAGCGTTGAGGAGGCTGATCGCTGCATCAAGTCTCTGAATCGCTCAGTACTTGAAGGCA
GAGTTATCACTGTGGAGAAGGTAGAATTTATAGAATATTTGCTCAGTTTTTTTGAATCTT
ATGTTTGCAATTTTCTCTGGTTATCAGCTCTTAGTTATATCAATATCTTATATTGCTTCA
GTAATTTGATCAGTTTGAAAATTGTTAGCTTGTTTCGCAAGGAAGCTGTGTGTAGCAGCT
CTTCACCAAAGTCCAAATAACAAATCAAAACACATCAAGCCAACAGACTGTTAACCAGAG
GGTTGTAGCCTTCATTTTTCCTTTATTCAGCTGCGCCCTTGTTGCATGTTATTCATTTCT
CATTGGTTACTTATTTCGTGACGTCGTTGTATTGCATCAACCCGCCAAAGTCTAGATTTG
CTGTTTGACAATTGTCTCCTATGCAGGCTAGGAGGAGAAGAGGTAGAACACCTACTCCAG
GAAAATATTTGGGGCTTAGAACTGTTCGCGTTCGTCGTGAATCACGAAACTATCCTCATC
ATTCAAGGAGTCGCTCTCCTTGTTACTCATCTGAAAGCTACAGGAGCAGGAGCAGGTCTT
ACTCTCCATATTACCGACAAGAGCATAGATCATACTCTTATTACAGAGGACGCCAGAGAT
CTCACTCATCATATTACAATCGACACCACTGCTACTCAGAATCACCTTATTCTCCTTACT
ATAGTCGTGTCAGGTCTTACTCTCGATCTTTATCCCCATATAGTCGGCGTGATCGGTCCT
ACTCTCCAGATGACCGTTACTACAGAAGAAGCCGTTACCATGACTATTCTCCCGACAATC
ATCGGCGTGATCGTTCCTATTCTCCAGATGACCGTTACTATAGAAGAAGCCGCTACCGTG
ACTACTCTCCCGAAAGCCGTGATCTTTCGGACTCTCCAGATGTTCGTGACAACAGAATGA
GCCGCTATCGCGATTACTCTCCGAACAGTTACTATTATCGAAGGAACCGATATCGTTCCA
TTTCTCGGAGCATTTCACCTCGATATCGGAGAAGCTACTCATGCAGTGCATCACCTAGGT
GGTCAAAGAGGAGCTATTCAAGAAGCGTTTCCAGGAGCAGCTGCTCTCGTAGCAGTTACT
CTCCTAATCCGAAGAAAAGCTCTAAGAAGAGTCGCAGTGTTAGTGCATCTTCCAGATTTG
TTTCAAGGTCTGTTACACCTAGGTCTTCGCCTTCATCATGAAAGGACTACACTACTAGGA
AGGTCTAGTCTGTCACTCTCTGTTGCAAAGAGTTTAAAGTTGTACTAGATTGGTCACTCA
AGTAGAATTACTCAAGATAACAAATCTGCTTTCCAGCTTATGTGACTGGTGGAAATGAGA
TCTAGCTGTACTATTGTGTTTGTAATTTAATGCAGAGGTAATACGGTGTATTGACCGAAT
ATGGAAACGACACTAGCATATTAATGTGTACGAAGCCAGTACAGAAATCTCTCAATTTCT
TCATTGCTTTCTAGTGGCTTTTATATGTTGGGTGTGTATAACATAGTATTTCATGGGTTA
TAACTTGTGAGTATTCCTGTAACTATATGCGGTGCATGACTATTGAAGTCTTGAACTAGT
AGTAATTCACACAGGTTTAAATGCTATAGCCTTGATGTAGTAGTTACATAGCTGTTGGCC
ATGATTATATGTTCATGTGGGCGTTCTCCTCGCTGCTAATGGCAGAGAGTATGTTCTTGG
AAGAATATACCAAGG
