Microarray Probes on PGSC0003DMT400075439
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_8269_PI426222305 |
JHI_St_60k_v1 |
CTGTGTACAGACAAGAGACTCTACCTTTTGTGTATAGATGTTTGTTAGACTATTGAGGTA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400075439
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400075439 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G53350.1 |
+1 |
1e-160 |
501 |
338/919 (37%) |
Disease resistance protein (CC-NBS-LRR class) family | chr1:19903899-19907515 FORWARD LENGTH=927 |
Transcript Sequence (3090 bp)
>PGSC0003DMT400075439 3090 pgsc_dm_v3.4
CTCAACACAAACACAAAAATGTATGATAGTTCTCTCTTTGGTCTCTTGCAAATGCTATAC
GAGACACTAAAGAACGAGGCGAAATTCTTGTCAAATGTAAGTAATCAAATTCAAGACATT
CGTGCTGAAATAAATCGAATACAATGCTTCTTACAAGATGCAGATGCTAAAAAACCTGAG
TATGAGACAGTTCGTAACTGGATTGCAGATATCAGAGAAGTTGCTTACGATGTAGAAAAT
ATCCTCGAGAAGTATATGCATAAAGTTGCATTGAGGAAGGATCGATCGTTGTGGAAGGAG
AATATAAATTTACATAACATAGGCCTGGAGACAAAAGATGTTATGTCCAGAATTGATAAC
ATAAAAAGATGTATGAAAACTTATGTTGATACAGGCATAAGAGCTATATGTCAAGGGGAT
ACCTCGTCGGAGAGAAGTCAATGGTTAACGAGATCTTACTCTCATCTTGTTGACGAAGAC
TTTGTTGGTTTAGTAGAAGAGGTGAATAAGTTGGTTGATGAGTTGATCAATGAAGAAAAT
GATGAGTTTTATGTAGTTTTCGCGATATGTGGAATGGGAGGTCTTGGTAAAACAACACTT
GCTCGGAAGGCTTATCGTCATGGTGATGTACAAAGTCATTTCCAGGCTTTCGCGTGGGCT
AGTATCTCGAGACAATGGCAAGCAAGAGATGTGCTGCTGAGCATCCTCATGAAACTTGAA
CCTGAAAACAGAACAAGGATTAATATGATGATGGATGATGAGCTTGTTAAGGCACTTTAC
AATGTTCAGCAGAGGAAGAAATGCCTTATTGTGTTGGATGATATTTGGTCTACAGATTTC
TGGAATAGTGTAAAACATGCTTTTCCGAAGGGGAAAGGGAGTCGAAGCAAGATTTTGCTC
ACAACGCGCAAGAAGGACGTGTGTACACACATAGATCCAACTTGTTTCTTGTTTGAACCA
AGATGTTTGGATGCTGAGGAGAGTTGGAAGTTACTCCATAAGAAAGCATTCCCCGGAGTA
AACACTCCAGATTTAATTGATTTGGAGTTGGAGAGGCCTGGAAAGGAAATGGTCAGTAAA
TGTGGAGGCTTGCCTTTAGCCATTATTGTGCTTGCTGGACTCTTGGCTAGAAGACCTAAA
ATCGATGAGTGGAGAAGGACATGCCAAAACCTTAACTTACACATGAGTGGTGAAAGTTTT
GAACAAGATGGAGGAATTCATGGTGTCCTCGCGTTGAGCTATTATGACTTACCTTATCAG
CTGAAGCCGTGTTTTTTGTACTTGGGAAACTTTCCTGAGGATCAAAAGATTTCTGCGCGG
AGATTGTATCAGCTATGGGCTGCTGAAGGTATCATATCATTGGAAGGTAACCGAGGAGAG
GAGACAGCAATGATGGAGAGAGGGGAACGTTATCTGCACGAGTTAGCTCAAAGGTACATG
GTTCAGGTTCAACTAGAGGAAACAACTGGAAGGATCAAATCTTGTCGATTTCATGATCTC
ATGAGAGATACATGTTTGTCGAAAGCAAAGGAGGAAAACTTTCTCAAGACAGTTTCTCCT
CAGCATTTGCATCAATCGATGCACTGCTCTACTTCAGCTACAGCAACATCAACACGTACT
GTACGTAGAGTGTCTATCACAGTAGACAATGAAGTTCAGAACTATTTCTCTACTGATGAT
AAGTCATTTCAGCATGTTAGATCAGCTTTATTCTTTCCCATACAGACAGGACGCGAAGGC
ACAGAATATCCCCTGCCTTTATTCCAAGGTCTGTGCAATAACTTCTCAATGTTGAGAGTT
TTGCATCTTGAGAAGTTCACTTTTGTGGAAATTTTACCAAAAGCAATTGGTAATTTGGTA
TACTTGAGATACCTGAGCTTAAGACATTCACACTTTCAAAAACTTTCGTCGTCTGTAGGT
AATCTCAAGTACCTACAGACACTTGATTTGAGGGTGAATTTCTTCTCGTACTTAACTTTA
CCGAATACCATACAGAAGTTGCGAAACTTGAGGAATTTATATCTTCCTCCTTCACATCAA
CACACGTATAAGTTAGACCTGAGTCCATTAAGCCACTTGGAAATACTGAAGAACTTCGAT
ACACAAGTTTCTCCTTTTCAAGATCTTTTCAAGTTAACAAAACTTCAGAAACTATCAGCT
GTTCTCTCATTGGAGTCGTACGAGATGGAAGAGATGATCAAACACCTCAACCTCAGATCA
GGTAGACTCAGGGAAACATCTTTTCGTATTTACTACAGATTTCATTCAGAAAAAGAGGTA
AACATTCTGAAGCTACTGTTAGGTTGTCACCATCTCCGGAAGCTAGATTTAATCGGACAC
ATCACTCAGCTACCAGAACACCACTCATTTTCACAAAGCCTCACTAAGTTAACCTTGAGA
AAGAGTGGACTTGAAGAAGACCCTATGGTTATTCTTCAAAAGCTGCCTAAGCTATTCAGC
TTGTCATTACGTGGAAACGCGTTTATTGGAAAGGAAATGTGTTGTTCTCCACAAGGATTT
CCACTACTCAAAACTCTTAAACTCCAGGGGCTACTAAATTTAGAAAGCTGGAGGGTGGAG
AAAGGGGCACTGCCAAATCTAGTTCATCTAGAAATCGACGAATGCAAGAAGTTGGAGATG
GTTCCTGAAGGATTGATATATCTAACTAAAATACAGGAGGTAATGATTATAAACATGCCA
GAAAACTTCCAAAACAGGCTGCAAGAGGTTCAAAGGGAAGAATTTTACAAAGTTCAGTTC
AGGAAAAATTTCGACACACAGAAGATTTCAAAGATCAAATTCAAAATGCGAATATCAGGA
CCAATGTTTGGTGGATTATTGCAGACCATTTATCCATCAACAGTACCAAAGGAATGGAAG
ATGTTATAAGGATCTACGGGGAAGATATTATCAATAAGGTCATGCATGTATTTCAAGCTA
TCCTTAATTCAAAATTCGAGGGAAAGTTGAAGGCCTTGCTTCTCATATTTGCAAGGTTGT
ACAGTCTTAGTGAAAATTCTGGCATTGCCACTGTGTACAGACAAGAGACTCTACCTTTTG
TGTATAGATGTTTGTTAGACTATTGAGGTA
