Microarray Probes on PGSC0003DMT400075404
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_8339_PI426222305 |
JHI_St_60k_v1 |
GAGTATAGACTTGAGGTCATGTCTTTTTAGGATTATTCCGGATGTACAATGCAATTTCAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400075404
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400075404 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G42200.1 |
+3 |
4e-39 |
139 |
67/139 (48%) |
RING/U-box superfamily protein | chr5:16860523-16861014 FORWARD LENGTH=163 |
Transcript Sequence (1105 bp)
>PGSC0003DMT400075404 1105 pgsc_dm_v3.4
ATTATGTTATTTTGCTACTCTTTTCACTTTTCATCCCTCTCTTCTTTTCTCTCCCATCAT
TGCCACAACTATTATCAACACCCCCCTTAAAATAAATATACTCGAATTGTGTTGATATTA
ACCAAAAAGATACTCTCCTCGAAAGGTCTTGAAATAAAAAACCCTCTTCTCTTCTTTTCT
TTCCCATCATTGCCACTATTATCAACACCCCCCCTTAAATAAATATACTCGAATCGCGCT
GATATTAACCAGAAAGATACTCTCCTCGAAAGATCTTGAAATAGAAAACCCTCAAGAAAA
CAATGCTTTTTAGTGTGTTTCTAGCATTATTTCTTCCATGTGTTGGGATGAGTGTTGTTT
TTGTAGTGTACATGTGTTTTCTTTGTTATGCCACAACAACAAGGCAACAACGACAACAAC
ATAATATTAATCAAGAAACTATAAAGGGTGTTAAAGAAAAGGGACTTTCTTTAACACAAT
TGGATAAATTGCCTAAAGTTAGTGGACAAGAATTGGTTATGGGAAATGATTGTGCTGTTT
GTTTGGGTGAAATTGAGAAAGAACAAGTGGCAAGAATTGTACCAGGTTGTAATCATGGTT
TCCATATTGAATGTGCTGATACTTGGTTGGCCAAACATCCTGTTTGTCCTGTTTGTAGAA
GTAAACTTGAGACAGAGTTGTTTGATACTACCAATGAAAACAATCCTTGCTAATGGGGAC
TGATACCAGAAATCGAACCCTCACCAGCAAGGTGAATGTTCAGATAGTCAACCAACGGAG
CTATGAGATTTTCTTTCTCCTACAATTTCTTGTAAGGTTGAACACCTAATTAAGGTGTTG
TGAGATGATAAGAGATTCAATCAAGACAACATTTTTCTTGTGTTTCTACTTTCTTTCTCT
TTTTTTAAAGGTGTTCTATTTGCTCGCGGTCCATGTTCGATATCAGATAAAGCAAATCTT
GATTTTCGTTTTTCTTGTGATGGACCTCGACGAGGGGGTACATATTGAGTATAGACTTGA
GGTCATGTCTTTTTAGGATTATTCCGGATGTACAATGCAATTTCAATATTAATAGCATTT
CAGATTAAATTAATCCAAAAATTAC
