Microarray Probes on PGSC0003DMT400072481
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_2107_PI426222305 |
JHI_St_60k_v1 |
TGGGAAAAATCAGATCTGTTTATAGTTTGATGGTAGCTTGGGGGATACAATGTTTTGATG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400072481
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400072481 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc10g081040.1 |
-1 |
6e-105 |
309 |
173/196 (88%) |
evidence_code:10F1H0E1IEG genomic_reference:SL2.50ch10 gene_region:61543313-61543900 transcript_region:SL2.50ch10:61543313..61543900+ functional_description:Unknown Protein (AHRD V1) |
| TAIR PP10 |
AT3G56880.1 |
+3 |
1e-30 |
117 |
92/248 (37%) |
VQ motif-containing protein | chr3:21060044-21060781 FORWARD LENGTH=245 |
Transcript Sequence (1000 bp)
>PGSC0003DMT400072481 1000 pgsc_dm_v3.4
TACCTCTTCTCTCTTCACTTTTTTCATCTAAAATCCTCGAAAACATCATCTGGGTCTTTC
TAAAATATGCTGTAAACATCAATTTTGACCTAAAAAACACTTAATTTGGTTAATTTTTGA
GGTCTGAAGAAACAAAAATGGCGTCTTCTGATAATTTGATGACAATGGAGCAATGGGGTT
TTCGTTCTGCTTTTAACGATTCATGGTTTACCGATATCTTCGCTAAAGAAACTGAAACCT
TAACGAAAGTCTTGCAGAAATCATATACCGGCGAAGGGAATGAGGTTGTTATGCCTATTG
TCGAAATGGGTTCCCCGTTTTTAACTCCGAGTGCATCTGGGCCGACGTTTTCCGGTGGGT
CGGAGAACGACGCTGCTTCAACCGGAGCTTCTGGTTCGATGAAGCGGCGGAATGGTGGTG
GTGGAATGAGCAAAAAGATCGTGAAGCGTAAGCCACGCGCTTCGAAGCGCGCGTCGACTA
CGTACATAACGGCGGACGTTGATAGTTTCCGGCAGATGGTGCAGCAGGTGACCGGAGCTA
GAATCTCCGGGAACGGGAACGGACAGTTGTCGGTTTCTTCTATTTTGAAGCCAGAGCCGA
GGCGACCGGTTGACCGGGTACAGCCGGTGAGCTGTTTGCCTACTTTGGACACGTCAGCTT
TTCTACTGGACCCCACTTCATCGTTCATGCATCCACCACCGGCGATGGCCGGGAGTGTCG
CCGTACGTCAGCCGTCTGCGGTGGTGGTTGACGGTGGCTATGGTTTTGACTCTTTTTGTG
GCTTTCCTACCCTTGAATCAGGAATGTAATGCTAATGAAGTTAGTAGTATTATTAGGGAC
TTTGTTGTAATTTCACCTTTGTAGTTTAAGGGAGGGGTAAAATGGGAAAAATCAGATCTG
TTTATAGTTTGATGGTAGCTTGGGGGATACAATGTTTTGATGTTGAAATTAATTATTATA
AGATGTTTTTTTCCAAAAAAAAATGGTTTAATTTTGGTTT
