Microarray Probes on PGSC0003DMT400072393
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_2270_PI426222305 |
JHI_St_60k_v1 |
TATCTTTGGAATTTGGATATTCCCTCTCCATTGAGGTTTTCACCATGCATTATTGGTTAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400072393
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400072393 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc10g083460.1 |
+1 |
1e-79 |
243 |
138/160 (86%) |
evidence_code:10F1H1E1IEG genomic_reference:SL2.50ch10 gene_region:62577522-62578001 transcript_region:SL2.50ch10:62577522..62578001+ go_terms:GO:0008270 functional_description:Zinc finger A20 and AN1 domain-containing stress-associated protein 6 (AHRD V1 *-*- C1BNQ4_9MAXI); contains Interpro domain(s) IPR000058 Zinc finger, AN1-type |
| TAIR PP10 |
AT2G36320.1 |
+1 |
6e-47 |
158 |
85/161 (53%) |
A20/AN1-like zinc finger family protein | chr2:15229388-15229873 FORWARD LENGTH=161 |
Transcript Sequence (948 bp)
>PGSC0003DMT400072393 948 pgsc_dm_v3.4
ATTATTAAATTCCCTTTTTCATTTTTTTTCTTTTGTCTCCTTTCCCCTTCTCTATTTATC
TATTCTCCCTTCACCCCATTTTTTCTCCATTTGCTTTACACAATTGAATTAAAAAAAATT
CTTTGATATCGAAGAGAAATCGATATAATTATGGCGGAAGAGCATGGATTTGAAGCACCA
GAAGGACATATATTATGCGCTAATAACTGTGGCTTCTTCGGCAGCCCAACAACACAAAAT
TTCTGCTCCAAATGTTACAATGAAGTTTATATAAAAGGGGGACAACAAAAACCTATTGAT
TCCCTCTTTCCTCCGCAGCTGCCGATTCCATCTCAAAGCTCATCGGTACTGGTGCTTCCG
GAACCGGCAGCTGTTGAGGAAAAACCGGAGGTTGTGATCGCGGCCGTAACGGCCGCGGTC
CAACCGATGCCTGCACAGTCGAACAGGTGTTCGGCCTGCAGGAAGAAGGTGGGATTGATC
GGGTTCAAGTGTAGATGTGGGACCACGTTTTGTGGGACCCATCGATACCCGGAGATCCAT
GGATGTTCGTTTGATTTCAAATCTATGGGAAGAGAAGCCATTGCTAAGGCAAATCCGGTG
GTTAAAGCAGAAAAATTGGGGAAGATATAATCACAGCCGTTGGATTTAGATGATGAAATC
TCGTCGGAAAATGACGTCATGCGAATTAATATTATATCAATTATGGGGACCAAAATGGAA
ATAGAGAAAAATCTTGGGGGGGTGTCCCATTATTGACCAAAAAAAATGTGAATTAATTAG
TGTATATTTTTTTTTGGTTATTTTTTATCTTTTGCTTGGAAAATAATTTATGGTTTGGCT
TGTTTTTGGATTTCAACTTTACTATCTTTGGAATTTGGATATTCCCTCTCCATTGAGGTT
TTCACCATGCATTATTGGTTAAATAAATAAAGATGATGAAAGTTATAC
