Microarray Probes on PGSC0003DMT400070606
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_10289_PI426222305 |
JHI_St_60k_v1 |
AGAGGGTTGAATCAACGGTTGTGATTAACTTGTTGTGGGATAATATGGTTTGGATTTTTT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400070606
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400070606 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT4G16850.1 |
+1 |
1e-22 |
92 |
53/137 (39%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:9480699-9481640 FORWARD LENGTH=313 |
Transcript Sequence (483 bp)
>PGSC0003DMT400070606 483 pgsc_dm_v3.4
ATGCTAGCGTGTGGCATTGTGCCCGGGATGCTCGTGGCGTTTCTCGAGACCCGCCCGTTT
GTTCGGGTGGTTGTTGAGGTTATCGGGTCGGGTTTGGAGCTCCATATGATGGCGGTTACG
AGCTTGGCACTCGTGGTATCGGTTAACGAAGGAATGTACGGGTTTGATGCGATTCGGGTC
GGGTCGGGTTTGATGGAGGGGAAACGGGTATGCGGGTGGGTTTTGTCCGGGTTGTTTGTT
TTGTTTTCGGGTTTGGTTCGTGGCACGATGGAAATGTCGATGGCCATGGCGATGGACGGT
TCGGATTTCAAGAGGGTTGAATCAACGGTTGTGATTAACTTGTTGTGGGATAATATGGTT
TGGATTTTTTTGTATGGTTTGATGGTTCAATGGAGCTTTGTTGTTACAACTGTTTTTTAC
TTTGATCTAAAAAAAAGAGATTCCATAAAAAGCGATAGAGATAGTGAGATTAGTTTAGTC
TAA
