Microarray Probes on PGSC0003DMT400068226
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_18881_PI426222305 |
JHI_St_60k_v1 |
CCTCAAATTCCTCTGAGGAGTTCTCTGAAATATCTTAGTGAAACCATTTATTGATGAAGT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400068226
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400068226 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G27650.1 |
+3 |
5e-101 |
320 |
195/294 (66%) |
U2 snRNP auxiliary factor small subunit, putative | chr1:9615152-9616042 FORWARD LENGTH=296 |
Transcript Sequence (2698 bp)
>PGSC0003DMT400068226 2698 pgsc_dm_v3.4
TATCCAGAAGCTTCTTCATCGTATATAATTCCTCCTCATCTTCATCTTCTCAACAATCCC
AGAAGAACAGAACTTTCCAGAATCCCAAATTCGTAATGGCAGAACACTTAGCTTCAATTT
TCGGTACTGAAAAGGATAGAGTGAATTGTCCTTTCTACTTCAAGATCGGTGCTTGTAGAC
ATGGAGATCGATGTTCGAGGCTCCATACGAAACCAAGTATTAGTCCTACTATTCTCCTCT
CAAATATGTATCAAAGGCCTGATTCAATTACCCCTGGTGTTGATGCTCAAGGCAATCCCA
TTGATCCTCGCAAAATCCAGGAACATTTTGAGGATTTTTATGAAGACTTGTTTGAAGAAC
TGAACAAGTATGGAGAGATTGAGAGCCTGAATATTTGTGACAATCTGGCTGATCACATGG
TTGGTAATGTTTATGTTCAGTTTAGAGAGGAAGAGCAGGCTGCAAATGCACTGAAGAATC
TTACAGGAAGATTCTATGCCGGAAGGCCCATCATTGTTGATTTCTCTCCAGTGACTGATT
TTCGTGAAGCCACCTGTCGACAGTATGAGGAAAATGTCTGCAACCGTGGTGGATATTGCA
ACTTTATGCACCTCAAAAAGATCAGCAGGGAATTGCGACGTCAATTGTTTGGAAGGTATA
GGAGAAGGCAAAGCAGAAGCAGGAGCCGAAGCCCTTATAGGCATCGCAGCTATGAAGACC
GCTCTCACAGGAGTCATAGTAGAAAGCATGATGAAAGGGATCATTATTACGAGAGTCGAA
GCAGGAGGAACAGAAGTACAAGCCCTGACCACAAGAGGGGTAGGAGTAGGAGTCCCGGTG
GCAGGAGAGACCGAAGTCCAGTTAGGGATGGCAGCGAAGAGAGGCGTGCAAGAATAGAGC
AGTGGAACAGGGAAAAAGAACAGGCAGAACTTGGTAACAGGGCTAATGCAGACAGTAATT
ACAAAAATGAAAGCAATCGGAATGGATCTGCTCCAAACCAAGATCAGTATTATAATCAAC
AATGACAAGAAAGTGCATATGGATAATGAGTGAGAATATCGTGCTGGTTTGTGTCCTTAT
CCCTTATGATTTTTGATGCTTTTGTTCTGTCTTAATGTATTGTCTTCTGAGAGGGCCACC
TGTCATGAAATAGAGCTTAATGCCCATTTTCTACTTGCAGGCGGTGCAGGTTTTCAATTC
TTTGATAAGCAATCTGAAAAGTTTTCGACCTCTAATTTTTTTTGGTGTTCTGGCTTTAGA
TATGCTTTTTTTTGTGCATCATTCATTGTTTACTATCGCATCTGCCCTTTGAAATTATTA
TTTTAAGTTGAAATAGTGGTTTGAACATAAATTTTAAGTGAACTTTTAGATTTGAACTTC
CACCCGCAATCCTCAACTTTCACAAACTTCTTATCCCAAAAACATAGCTATTGGAACAAA
ACTTCAACCACCTCCCCGAAATGTTTGTGTCTTCAGTTTTGAAATTTTTGTTGAGTGTGA
TTTTTCTTTCTTTAAGGTTACAGGGTGTATGCAGTTTTCTTCGACATTTTATTGTTTTGA
AGTGAAATTCCTCAACATCCTATGTGACATTATTCAAATTCCACAAACTATTGTGTTACT
GTTTGGGAGAAAATAACTTACTGATGCATGTTTTGTTGTGTTCTTGGCTCATCTATCAGA
ACATATTTGTGCAATATCTCTCTATAAAGTTGGAATTGAATTTAAATTAGGTGATGGAGT
GCCAGAAATCTAAGGTGCAATTGTATGTTGTCACAATGTTTGAAAAACTTGTCGAATTGG
TGGTAAATTCTCTGCACTGTAATTTTACCAGTTTAAAGTGACTCATGCAGTGTTGCCTTC
CAGGGTTTTCCACTGCATAAACCATTCCATAATTGTCAGGTAGGATTGGATTATGTAAAA
AAAGTGATAATAAACTTATCTTGTTGTATTAACATTTCAGTTTCATACATTTCTTGGTCA
TCCATTTGTTCTTCTAGGTTGTCCAGGCTGAAATGTCCTTTTTCTGGCTCTAGGTTTAGG
TCTTGCATTTTAGGGTGCTATGTAATAAGAAACGTTGACGATAACTTGCATGATGTTTAC
TTGTATAATCTTTGCAAATGCATTGTGTGCTTGTTTGTGCAGTCAGGTTTCTTTTGACCA
GAGCTCATCCAGGCTAAGCTTTCAAACTGTTGTTTGGCTTTTTTCTTCATTTTTATTACT
GCTTATTACCGGGAAATGTGTACAGGTTGTGGAGCCAAATCAGAGGATATATACCAACAG
GTTTGATTTCGCAGGCATTTGCAGGGACGAGAGAAGAATGACCGATCTGCAGCTGGAGAC
GACAATGTTCAAATTCTTATTCCTTTAGTCTATTTTTAGTTTAGGGTAATGCAACTTGGG
AAACTGCTAGTTTTGCATCCTCCAGACTATTGTTTGCTATTATGTATGGTGGTGAACTTA
TTTAAGGTTCTGGATGGCTAGTGTCTTGATGATATCATTTAGGTATTTCATCTTTTACTT
GATTTTGGTCTCTGTGCTAACAGTACGGGCTGTACTGTGTGTATGTTGGCGTTTGGACAA
TATTTGAACTAACCTGTGATGTTTGTTACCCCTCAAATTCCTCTGAGGAGTTCTCTGAAA
TATCTTAGTGAAACCATTTATTGATGAAGTTGAAATAATGAGATAATTTTTATGTCCA
