Microarray Probes on PGSC0003DMT400068040
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_37231_PI426222305 |
JHI_St_60k_v1 |
GGAGCTAGAAGTCTGGGTTGAATTTGATCGAATTCAGTAACTTTTGCTCAAATAATGTAT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400068040
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400068040 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G11590.1 |
+1 |
2e-47 |
164 |
95/175 (54%) |
Integrase-type DNA-binding superfamily protein | chr5:3727789-3728499 REVERSE LENGTH=236 |
Transcript Sequence (1122 bp)
>PGSC0003DMT400068040 1122 pgsc_dm_v3.4
TCGAATTACACTAATTTTTTCTCTCACTCCTCTTCTCTTCATATATATGTCCCTACTTTT
TTGGCATTCGATACATACTTCTCTAACCATCTGTGCAATGCAGTAACTGTCCATTTGAAT
CACCGTTAATTAATGGCGGAACTTGTACAATCATCTCCCATTTCCGTGTCAAAAACAGAG
GAACCAGAAGAGAAAGAGAAAGAGAAACGAATGGAAAAACGAAGAAGAGATGAATCTTAC
CCAGTATACAGAGGAGTTCGAATGCGAAGTTGGGGAAAATGGGTTTCTGAAATTCGACAA
CCGCGTAAGAAATCACGGATTTGGCTAGGTACTTATCCAACCCCTGAAATGGCTGCAAGA
GCACATGACGTTGCTGCGCTTAGTATTAAAGGGAATTCAGCAATTCTCAATTTTCCTCAA
CTCGTTGAATCGTTGCCTCGTCCAGCTTCAATTTCACCTAGAGATGTTCAAGCTGCTGCT
GCTAAAGCAGCTGCTATGGATGAACTAAATTCCTCTGTTTCTTCTTCTTCGACATTGAGT
GAGTCGATGGAGGAGACGATGACAGTAGCAGCAGCATCTGAAGATCAGTTAGGTCAGATT
ATTGAATTACCGAATTTGGAAGGAATTTTTGAGTCGGAAAAGATGAAGTTGAGTGACTCC
GGTGAAGGATGGGTTTACCCGCCGCCGTGGGGGGAATTTGAGGACGAATTTTGTGGGTAT
TTCTTTGAGCATACCGCCATTGGAGAGAGTTTAATTCCTAGCAAATTCGAGACGATGAAA
TGGGCTTGATTATTGTAATCAAACACAATTGTGTGACCCTTTTAGATTGATATGCTCTGT
TCATATTCACAATTCTTCTTCTTTCATGTTTGTAAGTAAATAAAAAAACATTTTAATTAT
CACAAGCATATTCTCCTATCTAGGATCACGTACTCTATGTATGGCTAATCACCTCTTTCA
CATACTTTTTCAACCTATCCTTGCATCCATCGTAGCAAACCTTTCGCACCTTCCGACTAG
CATTAATTTGTAGCCCTACAAGTAGTGGCGGAGCTAGAAGTCTGGGTTGAATTTGATCGA
ATTCAGTAACTTTTGCTCAAATAATGTATTTGTATAAATAAA
