Microarray Probes on PGSC0003DMT400067998
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_37278_PI426222305 |
JHI_St_60k_v1 |
AGTGTACGTGCACCTTGTTTGCATGTACATATATATGATTTCCGTTCTCTCTTCAAGTCT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400067998
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400067998 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G52140.1 |
+3 |
4e-38 |
136 |
90/217 (41%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16330.1); Has 114 Blast hits to 114 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19407559-19408185 REVERSE LENGTH=208 |
Transcript Sequence (943 bp)
>PGSC0003DMT400067998 943 pgsc_dm_v3.4
CCACAAATCAATTCACATATTTCTCTCTAAATCTCTTCTCTCTCCTTATAAAACACCAAA
TCTAGCCTTATATCAAAATAGAAAAAAAATATTACATTCTATAGATATAGAGAGAGATGG
CTGAACAAAATTTACCAGTAATAGCAAAGAAGTTTTGGAACATTGTACGTATTGCATTTT
TCATGTTGAGGAAAGGCATATCAAAGCGGAAACTAATGCTCGATCTCAACTTAATTATGA
AGCGTGGCAAAATCGTTAGTAAAGCCGCTATACAAAATCTCATGTTCCACCACATGACTC
ACCAATTTTCGTTCGCGTCCACAACTCACCGTGGCGGTCGTGATAAAAATTTACCCTTCT
CTCCTCAACACAATGAGTATGAATTCAGTTGTAGCAACACCCCAAATTTCCAACTCCCTT
CTTTCAATTTCAACAAGAAAAACAAAAATAAATACTTTTTTTCAAAGTCGCAGTCCCAGA
CATATGATATGCCTGGGACCGCGACTCATGAGGATGATGTGATTGTTGTGAATGCGGCCG
TGATGAAAGCCCTAGAGATGATTCATGAGAGTGAAACGGCTTCCCCTGGGGTAAACTACT
TGCCCGGGTTCGGAAGGACACCTATGGTTAGGCAACTACGAGTCACTGACTCACCGTTTC
CACTAAACGCGGAAGGAGATAGCCACGTGGATGAGGCGGCTGAAGCCTTCATTTCCAAGT
TTTACCGAAATCTGAGGTGGCAAGCCTCGCCGTGTGCTTAATAGTATATTCGATCGAGGG
GTTTTAATGCATGCATTATATAAAATATAATTATATAAGTATGAAGATTGGGAGCTGTGA
ATAGTGTACGTGCACCTTGTTTGCATGTACATATATATGATTTCCGTTCTCTCTTCAAGT
CTTTTTTTCTTCTTCTTTTTTTGGGGCTATTTTGGGAATTTAC
